New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 25741 =38 (1.640)4 (0.190) 4/230 NT 11.0% intergenic (+171/‑140) PP_0020/PP_0021 hypothetical protein/hypothetical protein
?NC_002947 25779 = 30 (1.410)intergenic (+209/‑102) PP_0020/PP_0021 hypothetical protein/hypothetical protein

AGGATCTGGGTTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGAT  >  NC_002947/25592‑25886
                                                                                                                                                     |                                                                                                                                                 
atgatcttgctttctgtgtcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagcgaggataggcagcagtaggcctaactgacccttttggtggtcacccactggtttgag                                                                                                                                                   >  2:179536‑M1/150‑150 (MQ=255)
    tCTGGGTTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGgccc                                                                                                                                               >  1:319026/1‑150 (MQ=255)
         gTTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCa                                                                                                                                          >  1:593713/1‑150 (MQ=255)
          tttGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAg                                                                                                                                         >  1:502048/1‑150 (MQ=255)
            tGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGt                                                                                                                                       <  2:319026/150‑1 (MQ=255)
            tGACCTTAGCTGACCGGCTGCCCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGTCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCCCCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGt                                                                                                                                       <  1:520054/150‑1 (MQ=255)
                  tcttcgatgcggaccttatagacatccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagcgaggataggcagcagtaggcctaactgacccttttggtggtcacccactggtttgaGGCCCGCCCAGGTCGATCa                                                                                                                                 <  1:193137‑M1/19‑1 (MQ=255)
                    gCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAgg                                                                                                                               <  2:138538/150‑1 (MQ=255)
                           ggCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCtt                                                                                                                        >  2:453736/1‑150 (MQ=255)
                            gctgctCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCttt                                                                                                                       <  1:453736/150‑1 (MQ=255)
                                ctctACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAg                                                                                                                                >  2:153418/1‑137 (MQ=255)
                                ctctACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAg                                                                                                                                <  1:153418/137‑1 (MQ=255)
                                           ccatctttgctgaaaccgtatcaatagagggtctctggatggtaacgagcgaggataggcagcagtaggcctaactgacccttttggtggtcacccactggtttgaGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAAc                                                                                                        >  2:193137‑M1/107‑150 (MQ=255)
                                                 ttttCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCTTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTgg                                                                                                  <  2:237286/150‑1 (MQ=255)
                                                                     aCTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAg                                                                              >  2:416369/1‑150 (MQ=255)
                                                                             tCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTgggcgg                                                                                                                 <  1:351345/107‑1 (MQ=255)
                                                                             tCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTgggcgg                                                                                                                 >  2:351345/1‑107 (MQ=255)
                                                                               cAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAgg                                                                         >  2:2015/1‑145 (MQ=255)
                                                                               cAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAgg                                                                         <  1:2015/145‑1 (MQ=255)
                                                                                aaGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTAct                                                                   >  1:308338/1‑150 (MQ=255)
                                                                                  gAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacc                                                                                            >  1:254518/1‑123 (MQ=255)
                                                                                  gAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGacc                                                                                            <  2:254518/123‑1 (MQ=255)
                                                                                     tAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACtgctgc                                                              <  1:490294/150‑1 (MQ=255)
                                                                                     tAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACtgctgc                                                              >  2:490294/1‑150 (MQ=255)
                                                                                        cccccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGt                                                                                                <  1:588689/113‑1 (MQ=255)
                                                                                        cccccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGt                                                                                                >  2:588689/1‑113 (MQ=255)
                                                                                         gagcgaggataggcagcagtaggcctaactgacccttttggtggtcacccactggtttgaGGCCCGCCCAGGTCGATCAGGCATGCTTTgggcgggc                                                                                                               >  2:592885‑M1/61‑97 (MQ=255)
                                                                                         gagcgaggataggcagcagtaggcctaactgacccttttggtggtcacccactggtttgaGGCCCGCCCAGGTCGATCAGGCATGCTTTgggcgggc                                                                                                               <  1:592885‑M1/37‑1 (MQ=255)
                                                                                          cccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCaaa                                                                                                         <  1:569947/102‑1 (MQ=255)
                                                                                          cccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCaaa                                                                                                         >  2:569947/1‑102 (MQ=255)
                                                                                          cccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTgg                                                                                                  <  2:100643/109‑1 (MQ=255)
                                                                                          cccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTgg                                                                                                  >  1:100643/1‑109 (MQ=255)
                                                                                           ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTgggc                                                                                                                   >  1:333545/1‑91 (MQ=255)
                                                                                           ccACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTgggc                                                                                                                   <  2:333545/91‑1 (MQ=255)
                                                                                                           tCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATcc                                        >  1:53642/1‑150 (MQ=255)
                                                                                                             ccAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACAAACGGGTGACCCCGGATGGAATGAGTTAGGTCTACTGCTGCCTATCCTCGCTCGTTACCATCCag                                      >  1:599483/1‑150 (MQ=255)
                                                                                                              cAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACtgctgc                                                              <  2:295253/125‑1 (MQ=255)
                                                                                                              cAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACtgctgc                                                              >  1:295253/1‑125 (MQ=255)
                                                                                                                gACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAgaga                                   <  2:502048/150‑1 (MQ=255)
                                                                                                                   cTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCAGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCATTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGGTCGTTACCATCCAGAGAccc                                >  2:260080/1‑150 (MQ=255)
                                                                                                                      tACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCctct                             >  1:539085/1‑150 (MQ=255)
                                                                                                                            tcACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATACAGAGACCCTCTATTGAt                       >  2:421891/2‑150 (MQ=255)
                                                                                                                                  gggggTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGtt                 <  2:539085/150‑1 (MQ=255)
                                                                                                                                           ttgttTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAg        >  1:167967/1‑150 (MQ=255)
                                                                                                                                                 cTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAgatggat  <  1:416369/150‑1 (MQ=255)
                                                                                                                                                    gggCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGAcc                                 <  2:286102/116‑1 (MQ=255)
                                                                                                                                                    gggCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGAcc                                 >  1:286102/1‑116 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
AGGATCTGGGTTTGACCTTAGCTGACCGGCTGCTCTACAAACCAATTGATTTTCTCCGGAGCCGGTGTCACTGTCGCTCCAAGAATAGCCCCCACGCCTCGGGCAGGTCCCAGACCTGTACTGCGCACCAGGGGGTTAGTTGTTTCTAGGGCCCGCCCAGGTCGATCAGGCATGCTTTGGGCGGGCCTCAAACCAGTGGGTGACCACCAAAAGGGTCAGTTAGGCCTACTGCTGCCTATCCTCGCTCGTTACCATCCAGAGACCCTCTATTGATACGGTTTCAGCAAAGATGGAT  >  NC_002947/25592‑25886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.