| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 386636 = | 18 (0.780) | 5 (0.230) | 5/240 | NT | 22.6% | intergenic (‑98/‑228) | ltaE/glyA‑I | low specificity l‑threonine aldolase/serine hydroxymethyltransferase |
| ? | NC_002947 | 386719 = | 17 (0.770) | intergenic (‑181/‑145) | ltaE/glyA‑I | low specificity l‑threonine aldolase/serine hydroxymethyltransferase | |||||
GCAGATACCGGAATAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAA > NC_002947/386488‑386741 | cattgtgtatctcccggcagcgatcgttttttgtcgtggggcactgtggccctttgtggcgatgttatgactggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcgctgg < 1:545008‑M1/2‑1 (MQ=255)cattgtgtatctcccggcagcgatcgttttttgtcgtggggcactgtggccctttgtggcgatgttatgactggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcgctgg < 1:557703‑M1/2‑1 (MQ=255) aaTAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCgg < 1:536327/150‑1 (MQ=255) gCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCt < 2:243333/150‑1 (MQ=255) tctTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGcgcccgcgaagg < 2:400100/138‑6 (MQ=255) tctTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGcgcccgcgaagg > 1:400100/1‑133 (MQ=255) gtctgtcATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAAc > 2:545008/1‑150 (MQ=255) tgtgAACGACGCAGATCAGCACTCTAAACAATAGATACAGCACTTGCCTATACAACCCGTGCAGCGATAATGGTTCATTACTGTCAGGTCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGTCAAAAAATGTAGGAGCg > 1:352000/1‑150 (MQ=255) actggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcgctGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCAcc > 1:526598‑M1/80‑150 (MQ=255) gCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATgg < 1:249118/111‑1 (MQ=255) gCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATgg > 2:249118/1‑111 (MQ=255) ggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgcggttgtgctgtttgcgctGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGaa < 1:506459‑M1/77‑1 (MQ=255) gCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGcgcc > 1:386918/1‑89 (MQ=255) gCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGcgcc < 2:386918/89‑1 (MQ=255) gCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAggg > 2:546201/1‑150 (MQ=255) cgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcgctGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGc > 2:506459‑M1/69‑150 (MQ=255) aCTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGcc > 2:387891/1‑150 (MQ=255) ccATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCaaa < 2:352000/150‑1 (MQ=255) ttGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGaa > 2:126408/1‑150 (MQ=255) gcgcgtttacgacattcgctgttgtgctgtttgcgccGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaa > 2:307869‑M1/38‑136 (MQ=255) gcgcgtttacgacattcgctgttgtgctgtttgcgccGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaa < 1:307869‑M1/99‑1 (MQ=255) aCAACCCGTGCAGCTTTTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaaca < 1:594/137‑1 (MQ=255) aCAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaaca > 2:594/1‑137 (MQ=255) cTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAg > 2:174231/1‑102 (MQ=255) cTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAg < 1:174231/102‑1 (MQ=255) | GCAGATACCGGAATAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAA > NC_002947/386488‑386741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |