New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1147935 =	40 (1.730)	4 (0.180)	4/242	NT	9.9%	coding (134/2589 nt)	PP_1006	heme receptor
	?	NC_002947	1147973 =	34 (1.520)					coding (96/2589 nt)	PP_1006	heme receptor

GAACCTTGTACGCCTGGCGAAGCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCGGGTAGGACCAGTGGACATC  >  NC_002947/1147791‑1148069                                                                                                                                                 |                                                                                                                                        gAACCTTGTACGCCTGGCGAAGCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGctgctg                                                                                                                                    >  1:169500/1‑150 (MQ=255) gAACCTTGTACGCCTGGCGAAGCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGctgctg                                                                                                                                    <  1:326198/150‑1 (MQ=255)  aaCCTTGTACGCCTGGCGAAGCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTgg                                                                                                                                   >  2:506197/1‑150 (MQ=255)     acagccatcacctataacagcccgcgcgtctgggagcgcttccgatgtccactggtcctacccgctcgtccaaccttccccgccgtacaggacaactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcct                                                                                                                                        <  2:31639‑M1/2‑1 (MQ=255)     acagccatcacctataacagcccgcgcgtctgggagcgcttccgatgtccactggtcctacccgctcgtccaaccttccccgccgtacaggacaactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcct                                                                                                                                        >  1:31639‑M1/141‑142 (MQ=255)                      gCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGcc                                                                                                               >  2:344436/1‑150 (MQ=255)                                 ggCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCGGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAg                                                                                                    >  1:587437/1‑150 (MQ=255)                                  gCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAgg                                                                                                   <  1:451359/150‑1 (MQ=255)                                   ccAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGc                                                                                                  <  2:368961/150‑1 (MQ=255)                                   ccACCTCGGCGCTAAACCCGACCTGCCAGCCGGTGACCTGTCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGc                                                                                                  <  1:291331/150‑1 (MQ=255)                                        tCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAg                                                                                             <  2:34938/150‑1 (MQ=255)                                        tCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAg                                                                                             >  1:543062/1‑150 (MQ=255)                                           cttccgatgtccactggtcctacccgctcgtccaaccttccccgccgtacaggacaactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCa                                                                                                     >  1:131114‑M1/103‑139 (MQ=255)                                           cttccgatgtccactggtcctacccgctcgtccaaccttccccgccgtacaggacaactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCa                                                                                                     <  2:131114‑M1/37‑1 (MQ=255)                                                   gCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCa                                                                                              <  2:557396/138‑1 (MQ=255)                                                   gCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCa                                                                                              >  1:557396/1‑138 (MQ=255)                                                   gCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑c                                                                                 <  2:543062/150‑1 (MQ=255)                                                     cGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGa                                                                               <  1:344436/150‑1 (MQ=255)                                                         cTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAg                                                                           >  2:601425/1‑150 (MQ=255)                                                               gCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGcc                                                                                                               <  1:241103/109‑1 (MQ=255)                                                               gCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGcc                                                                                                               >  2:241103/1‑109 (MQ=255)                                                                ccGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAgg                                                                    <  2:17589/150‑1 (MQ=255)                                                                       ccTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACa                                                             <  2:42037/150‑1 (MQ=255)                                                                        cTGGCTGAAGGCGTTGATCTCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTCGTCCGATCTCAGCCGTCTGGTGGCCTGGGCCGGCTCGGCGGACAGAGTTGGCAGCCTGTAGGCTTCGCTGG‑CGAGCAGGGCAAGGGTCAACAg                                                            <  1:601425/150‑1 (MQ=255)                                                                        cTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAg                                                            <  1:518628/150‑1 (MQ=255)                                                                        cTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAg                                                            >  2:594670/1‑150 (MQ=255)                                                                         tGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAgg                                                           <  2:169500/150‑1 (MQ=255)                                                                         tGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAgg                                                           <  2:323028/150‑1 (MQ=255)                                                                                   cGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCACGGGCACCCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTc                                                 <  2:516690/150‑1 (MQ=255)                                                                                       gATCGCCGACACCAGCAGCATTTGGCCGATGTTGAAGCGGTAATCGCTCATGCGCGGGCTGGTTGCCTTGGCCGGCACGTCGGCCAACCGCGGCGTGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGCTCAACAGGGCCAGTTATCCTGt                                             >  2:4916/1‑150 (MQ=255)                                                                                        aTCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTa                                            <  1:506197/150‑1 (MQ=255)                                                                                         tCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTAc                                           <  2:361301/150‑1 (MQ=255)                                                                                            ccGACACCAGCGGGTGCTGGCCGATGCTGCAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCGACAGGGACAGTTGTCCTGTAcggc                                        <  1:172244/150‑1 (MQ=255)                                                                                                  aactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcCTGCTGGCCTGGGCCGGCTCGGCGGCCa                                                                                                              >  1:528524‑M1/48‑75 (MQ=255)                                                                                                  aactgtccctgttgacccttgccctgctcgccagcggcgcctgcagcCTGCTGGCCTGGGCCGGCTCGGCGGCCa                                                                                                              <  2:528524‑M1/28‑1 (MQ=255)                                                                                                   cAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGTAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAg                                 >  1:604652/1‑150 (MQ=255)                                                                                                        gctgctGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGGGCCGATGGCCGGGTGGGGAAAGAGTGTA‑GTTGAGAGTGTTCCTGTAGGGCGGGGAAGGTTgg                            >  2:163242/1‑150 (MQ=255)                                                                                                                ccGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCgg                    <  2:347316/150‑1 (MQ=255)                                                                                                                ccGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCgg                    <  1:393849/150‑1 (MQ=255)                                                                                                                 cGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCggg                   <  1:408509/150‑1 (MQ=255)                                                                                                                 cGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTACTGGGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCggg                   <  1:163242/150‑1 (MQ=255)                                                                                                                   aTGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAgg                                                                    <  1:365144/99‑1 (MQ=255)                                                                                                                   aTGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAgg                                                                    >  2:365144/1‑99 (MQ=255)                                                                                                                    tGCTGAAGCGGTAGTCGCGCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAAGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCGGGTAg                >  2:38559/1‑150 (MQ=255)                                                                                                                    tGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCGGGTAg                <  2:587437/150‑1 (MQ=255)                                                                                                                                  tCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCGGGTAGGACCAGTGGACATc  >  2:431609/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                        GAACCTTGTACGCCTGGCGAAGCCACGCCGTCGGCCAGCTCGGCGCTGAAGCCGACCTGCCAGCCGGTGACCTGGCTGAAGGCGTTGATCGCCGACACCAGCGGCTGCTGGCCGATGCTGAAGCGGTAGTCGCCCATGCGCGGGCTGCTGGCCTGGGCCGGCTCGGCGGCCAGCGCCGGCAGGCTGCAGGCGCCGCTGG‑CGAGCAGGGCAAGGGTCAACAGGGACAGTTGTCCTGTACGGCGGGGAAGGTTGGACGAGCGGGTAGGACCAGTGGACATC  >  NC_002947/1147791‑1148069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.