New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1581381 =	23 (1.000)	3 (0.140)	4/240	NT	12.5%	coding (58/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1581399 =	20 (0.900)					coding (40/3153 nt)	ttgB	efflux pump membrane protein TtgB

GATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTT  >  NC_002947/1581244‑1581525                                                                                                                                          |                                                                                                                                                 gATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGc                                                                                                                                      <  1:80850/150‑1 (MQ=255) gATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGc                                                                                                                                      >  2:568136/1‑150 (MQ=255)      ccTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCACCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCa                                                                                                                                 >  2:443004/1‑150 (MQ=255)       ggtgaaggtcagcgatgccaccaacgtcaagaagccggccggtcctgatcaggccaacgcggcgaaagcagacgccaaagcggagtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc                                                                                                                                >  2:543964‑M1/132‑150 (MQ=255)          caccacGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCa                                                                                                                             <  2:150672/150‑1 (MQ=255)                               ttGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGcgatcgat                                                                                                        >  1:593441/1‑150 (MQ=255)                                tGCGCCGAGGCACCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATa                                                                                                       <  1:443004/150‑1 (MQ=255)                                            cccGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGAc                                                                                           <  2:201204/150‑1 (MQ=255)                                                       cACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTc                                                                                >  2:462200/1‑150 (MQ=255)                                                           gcgatggcgatgGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCt                                                                            <  2:544862/150‑1 (MQ=255)                                                             gatggcgatggcTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCttt                                                                          <  2:317075/150‑1 (MQ=255)                                                                   gatggcTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTc                                                                    >  2:71326/1‑150 (MQ=255)                                                                                gcgATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCcgcg                                                       >  1:561970/1‑150 (MQ=255)                                                                                         gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGc                                                                       >  1:595068/1‑125 (MQ=255)                                                                                         gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGc                                                                       <  2:595068/125‑1 (MQ=255)                                                                                         gggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTATGCTTTCGCCGCGTTGGCCTGa                                              >  2:540429/1‑150 (MQ=255)                                                                                          ggTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGAt                                             <  1:462200/150‑1 (MQ=255)                                                                                           gtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc                                                                                                                                >  2:281374‑M1/48‑66 (MQ=255)                                                                                           gtaaaccatgtcgaagttctttatcgatcgcccgatcttcgcctgggTGATCACCAAGGCGATCAc                                                                                                                                <  1:281374‑M1/19‑1 (MQ=255)                                                                                            tACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCa                                           <  1:568136/150‑1 (MQ=255)                                                                                                      tCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGAccggccg                                 >  1:364171/1‑150 (MQ=255)                                                                                                                    aTGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTtg                   >  1:541697/1‑150 (MQ=255)                                                                                                                      ggACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTtggt                 <  1:71326/150‑1 (MQ=255)                                                                                                                            ggCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATc           >  1:186958/1‑150 (MQ=255)                                                                                                                            ggCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATc           >  1:186956/1‑150 (MQ=255)                                                                                                                               cccGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCt        >  2:90312/1‑150 (MQ=255)                                                                                                                                     ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGc                                                                 <  2:404904‑M1/82‑1 (MQ=255)                                                                                                                                     ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGc                                                                 >  1:404904‑M1/6‑87 (MQ=255)                                                                                                                                     ctgggTGATCGCCTTGGTGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCtt  <  1:59247‑M1/145‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                 GATCACCTGCACCACGGTGTCCTGCACGGTTTGCGCCGAGGCGCCCGGGTAGGTCACGGCGATGGCGATGGCTGGCGGCGCGATACTGGGGTACTGGTTGATCGGCAGCTTCAGGATGGACAAGGCCCCGACCAGCATGATCACCAAGGCGATCACCCAGGCGAAGATCGGGCGATCGATAAAGAACTTCGACATGGTTTACTCCGCTTTGGCGTCTGCTTTCGCCGCGTTGGCCTGATCAGGACCGGCCGGCTTCTTGACGTTGGTGGCATCGCTGACCTT  >  NC_002947/1581244‑1581525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.