New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2143400 =	23 (1.000)	4 (0.180)	4/238	NT	16.4%	coding (137/435 nt)	PP_1899	ExbD/TolR family protein
	?	NC_002947	2143445 =	19 (0.860)					coding (182/435 nt)	PP_1899	ExbD/TolR family protein

GTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCGGGCGGCGACAACAAGTTGCCGCTGGCCATCAGCGCCGACGG  >  NC_002947/2143297‑2143592                                                                                                                                                     |                                                                                                                                                    gTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAg                                                                                                                                                    >  1:172787/1‑150 (MQ=255)       aTCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggtg                                                                                                                                              <  2:93820/150‑1 (MQ=255)                                 ggtgTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCgt                                                                                                                    <  1:180258/150‑1 (MQ=255)                                    gtTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTa                                                                                                                 >  1:563232/1‑150 (MQ=255)                                        gTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCg                                                                                                             >  1:426702/1‑150 (MQ=255)                                          ccTGCGGCTGTTCTTCGTGGTTACCACACCCTTCCCCCGCGACACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGt                                                                                                           <  2:563232/150‑1 (MQ=255)                                            tgctgctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGa                                                                                                         >  1:82430/1‑150 (MQ=255)                                                 ctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaac                                                                                                    <  2:82430/150‑1 (MQ=255)                                                 ctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaac                                                                                                    <  1:442140/150‑1 (MQ=255)                                                      gttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggt                                                                                                                                               >  1:353331‑M1/51‑102 (MQ=255)                                                      gttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggt                                                                                                                                               <  2:353331‑M1/52‑1 (MQ=255)                                                       ttcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCCCCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACctg                                                                                              <  1:104236/150‑1 (MQ=255)                                                                    ccaccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCt                                                                                                                                                  >  1:238115/1‑85 (MQ=255)                                                                    ccaccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCt                                                                                                                                                  <  2:238115/85‑1 (MQ=255)                                                                      accTTCACCCGGCAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGAc                                                                               <  1:402981/150‑1 (MQ=255)                                                                        cTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCAGGGAAGGCTGGGGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCt                                                                             >  2:511898/1‑150 (MQ=255)                                                                         ttCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTg                                                                            <  2:202061/150‑1 (MQ=255)                                                                             cccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCa                                                                        >  2:15787/1‑150 (MQ=255)                                                                              ccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGCACAACCACCTGCTGCCCAAAAGCGACCTGGCCAc                                                                       >  2:240172/1‑150 (MQ=255)                                                                              ccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGa                                                                                <  1:181959/141‑1 (MQ=255)                                                                              ccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGa                                                                                >  2:181959/1‑141 (MQ=255)                                                                                   aaaCGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGa                                                                  >  1:551414/1‑150 (MQ=255)                                                                                        cAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAg                                                             <  1:589312/150‑1 (MQ=255)                                                                                                 accagcttgcccgggtcggccggcgccggctcggcgctggtggcttcgggcaAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaac                                                                                                    <  2:353331‑M2/50‑1 (MQ=255)                                                                                                 accagcttgcccgggtcggccggcgccggctcggcgctggtggcttcgggcaAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaac                                                                                                    >  1:353331‑M2/53‑102 (MQ=255)                                                                                                           ccgggtcggccggcgccggctcggcgctgatggcttcgggcaAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCgg                                          >  1:113970‑M2/43‑150 (MQ=255)                                                                                                                     cggcgccggctcggcgctggtggcttcgggcaAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCGGGCGGCGacaa                                <  2:113970‑M2/118‑1 (MQ=255)                                                                                                                        cgcCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCGGGCGGCGAcaacaa                             <  1:15787/150‑1 (MQ=255)                                                                                                                                                   caAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCGGGCGGCGACAACAAGTTGCCGCTGGCCATCAGCGCCGACgg  <  1:464463‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGAGTCGGGCGGCGACAACAAGTTGCCGCTGGCCATCAGCGCCGACGG  >  NC_002947/2143297‑2143592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.