New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2434132	37 (1.600)	7 (0.340)	7/224	NT	17.3%	intergenic (+32/+76)	uup/PP_2132	ABC transporter ATP‑binding protein/universal stress protein
	?	NC_002947	= 2434180	34 (1.640)					intergenic (+80/+28)	uup/PP_2132	ABC transporter ATP‑binding protein/universal stress protein

GCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGCCGACAACGATC  >  NC_002947/2434034‑2434328                                                                                                                                                   |                                                                                                                                                     gcgGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGccc                                                                                                                                                   >  1:566074‑M2/1‑147 (MQ=255)      tCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgagaa                                                                                                                                              <  2:322690‑M2/150‑9 (MQ=255)             gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGTCCCGCGAAGAGGCgg                                                                                                                                       <  1:50300/150‑1 (MQ=255)             gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                                                                       >  1:134104/1‑150 (MQ=255)             gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                                                                       <  1:497784/150‑1 (MQ=255)             gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                                                                       <  2:610506/150‑1 (MQ=255)               tGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCCGCCCCGGTTTTTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgggg                                                                                                                                     >  1:38448/1‑149 (MQ=255)                     gCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGt                                                                                                                               <  2:330911/150‑1 (MQ=255)                     gCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGt                                                                                                                               <  1:345574/150‑1 (MQ=255)                          cTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCGGt                                                                                                                          >  2:537730/1‑150 (MQ=255)                              aTGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAAt                                                                                                                      <  1:222975/150‑1 (MQ=255)                                   ttGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCCATCcttc                                                                                                                 >  2:403331/1‑150 (MQ=255)                                   ttGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCcttc                                                                                                                 <  1:534234/150‑1 (MQ=255)                                        ggAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTGGTAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAg                                                                                                            <  1:322690/150‑1 (MQ=255)                                             gcTGGGCTGAGCTGGAGGGCGGAGTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGGTTGCCATAGCCGCGGAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGc                                                                                                       <  2:125750/150‑1 (MQ=255)                                                  gCTGAGCTGGAAGGCTGATTAGCGTTAGCGTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGAGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTAcc                                                                                                  <  1:28864/150‑1 (MQ=255)                                                         tGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCa                                                                                           >  2:221862/1‑150 (MQ=255)                                                         tGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCa                                                                                           >  2:392540/1‑150 (MQ=255)                                                           gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCa                                                                                                             >  2:175677/1‑130 (MQ=255)                                                           gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCa                                                                                                             <  1:175677/130‑1 (MQ=255)                                                           gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACg                                                                                         <  1:166586/150‑1 (MQ=255)                                                              ggCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTca                                                                                      >  1:22620/1‑150 (MQ=255)                                                                  gATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACACTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACCCg                                                                                  >  1:49073/1‑150 (MQ=255)                                                                    ttGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGgc                                                                                >  2:274131/1‑150 (MQ=255)                                                                               cTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgcag                                                                     <  1:221862/150‑1 (MQ=255)                                                                               cTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgcag                                                                     >  2:132472/1‑150 (MQ=255)                                                                                     cGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccag                                                                                                          <  2:275886‑M2/107‑45 (MQ=255)                                                                                     cGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccag                                                                                                          >  1:275886‑M2/1‑63 (MQ=255)                                                                                         ctctTCGCGGGTAAAGCCGCACCTGCGGCTAGTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTg                                                           >  1:325013/1‑150 (MQ=255)                                                                                         ctctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTg                                                           <  1:119735/150‑1 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACGTGCGGGGATTGCCATACACTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCTCACCGTGCAGCTCATCGTTgg                                                          <  2:38448/150‑1 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccag                                                                            <  2:81783‑M2/132‑75 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccag                                                                            >  1:81783‑M2/1‑58 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgc                                                                       <  1:302731/137‑1 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgc                                                                       >  2:302731/1‑137 (MQ=255)                                                                                          tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTgg                                                          <  1:602505/150‑1 (MQ=255)                                                                                               gcgGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTg                                                     >  1:338312/1‑150 (MQ=255)                                                                                                 ggggagaGCCGGACCTGCAGGGATTGCCATCTCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCATGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGa                                                   <  2:137024/144‑1 (MQ=255)                                                                                                 gggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCggg                                                                                                                                      >  2:74531/1‑67 (MQ=255)                                                                                                 gggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCggg                                                                                                                                      <  1:74531/67‑1 (MQ=255)                                                                                                  ggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCaa                                                                                                                       <  1:450167/81‑1 (MQ=255)                                                                                                  ggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCaa                                                                                                                       >  2:450167/1‑81 (MQ=255)                                                                                                        gCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGCTTTAcccgcgaagaggccggaacaggctaacgccaatcagccttcc                                                                                                            <  1:428052‑M2/86‑43 (MQ=255)                                                                                                        gCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGCTTTAcccgcgaagaggccggaacaggctaacgccaatcagccttcc                                                                                                            >  2:428052‑M2/1‑44 (MQ=255)                                                                                                          cGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCcagcag                                          >  2:146756/1‑150 (MQ=255)                                                                                                               cTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATg                                     >  1:390973/1‑150 (MQ=255)                                                                                                                       aTTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCg                             >  2:184740/1‑150 (MQ=255)                                                                                                                           ccATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGAc                         >  2:292867/1‑150 (MQ=255)                                                                                                                                 ccTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccagctcgccctgcagcttctcgatccgcgccagcaccgccgaagtttctgcaatcggccg                   <  2:250301‑M2/150‑132 (MQ=255)                                                                                                                                       aGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGc             <  1:261127/150‑1 (MQ=255)                                                                                                                                               gCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCTTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGCCGACAACg     >  1:500605/1‑150 (MQ=255)                                                                                                                                                  ggCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGCCGACAACGATc  <  2:390973/150‑1 (MQ=255)                                                                                                                                                  ggCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGCCGACAACGATc  <  2:500605/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGAGCCCAGCAGCAATGCCAGGCCGTGACGGCCATGGCTGCCGACAACGATC  >  NC_002947/2434034‑2434328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.