New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2503015 =	25 (1.080)	3 (0.140)	3/238	NT	10.8%	coding (267/936 nt)	speB	agmatinase
	?	NC_002947	2503057 =	26 (1.180)					coding (309/936 nt)	speB	agmatinase

TTCGGCCCGCGGGCGATCCGTGCTGCCTCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATCCATTTCGATGCGCACAGT  >  NC_002947/2502908‑2503201                                                                                                                                                      |                                                                                                                                                 ttCGGCCCGCGGGCGATCCGTGCTGCCTCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGGCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGc                                                                                                                                                  >  1:536262/1‑150 (MQ=255)    ggcgggcgtgagcattgagcagcgggtagctgatgaagtggtcgccaccaagggtcagcatggcgcaacccgcctgcagaatgtgctcggcatgggcctcgatgCTGCCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATc                                                                                                                                               >  2:504197‑M1/105‑150 (MQ=255)                    gTGCTGCCTCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGc                                                                                                                               <  1:425087/150‑1 (MQ=255)                          ccTCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACACGTTCGGCGACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTc                                                                                                                         >  1:352578/1‑150 (MQ=255)                            tCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCAGATCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCtt                                                                                                                       >  2:86934/1‑149 (MQ=255)                                        gCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTgc                                                                                                           >  1:87063/1‑150 (MQ=255)                                          cTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAgg                                                                                                                                           >  1:70894/1‑116 (MQ=255)                                          cTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAgg                                                                                                                                           <  2:70894/116‑1 (MQ=255)                                             tcgccaccaagggtcagcatggcgcaacccgcctgcagaatgtgctcggcatgggcctcgatgCTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCa                                                                                                                                                 <  1:517806‑M1/44‑1 (MQ=255)                                             tcgccaccaagggtcagcatggcgcaacccgcctgcagaatgtgctcggcatgggcctcgatgCTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCa                                                                                                                                                 >  2:517806‑M1/64‑107 (MQ=255)                                                               ggCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGa                                                                                    <  1:402905/150‑1 (MQ=255)                                                                gCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGAc                                                                                   <  2:536262/150‑1 (MQ=255)                                                                       acccgttcgaccACCGGGCGGTCAGCGACTATGGCGACTGTCCCTTCGCCAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTtca                                                                            <  1:272709/150‑1 (MQ=255)                                                                         ccgttcgaccACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTtcatc                                                                          >  2:512376/1‑150 (MQ=255)                                                                                          ggTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAg                                                                                                                                            >  1:380346/1‑67 (MQ=255)                                                                                          ggTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAg                                                                                                                                            <  2:380346/67‑1 (MQ=255)                                                                                           gTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAg                                                        <  1:512376/150‑1 (MQ=255)                                                                                            tCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAgg                                                       <  2:521082/150‑1 (MQ=255)                                                                                                    tATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCAcgcc                                               >  2:585869/1‑150 (MQ=255)                                                                                                        gatgctgtccggtaccgactgcggcgtgccgctgtcgaaggggcagCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAATGCTCAcgcccgcc                                           >  2:504197‑M2/47‑150 (MQ=255)                                                                                                          tgctgtccggtaccgactgcggcgtgccgctgtcgaagggacagCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGa                                                                                    >  2:517806‑M2/45‑107 (MQ=255)                                                                                                          tgctgtccggtaccgactgcggcgtgccgctgtcgaagggacagCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGa                                                                                    <  1:517806‑M2/63‑1 (MQ=255)                                                                                                                 CCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGcc                                  <  1:601804‑M1/150‑1 (MQ=255)                                                                                                                  cTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCt                                                                                                                        <  1:518217/63‑1 (MQ=255)                                                                                                                  cTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCt                                                                                                                        >  2:518217/1‑63 (MQ=255)                                                                                                                   ttCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACAt                                                                                                                           <  1:387614/59‑1 (MQ=255)                                                                                                                   ttCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACAt                                                                                                                           >  2:387614/1‑59 (MQ=255)                                                                                                                             gCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGc                                                                                                                      >  2:231496/1‑54 (MQ=255)                                                                                                                             gCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGc                                                                                                                      <  1:231496/54‑1 (MQ=255)                                                                                                                             gCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGa                      <  1:413782/150‑1 (MQ=255)                                                                                                                               gtgccgcTGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATc                    >  2:332904/3‑150 (MQ=255)                                                                                                                                 gccgcAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGGTGTTCCa                  >  1:61503/1‑150 (MQ=255)                                                                                                                                     ctgTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATCCATTTc              <  1:332904/148‑1 (MQ=255)                                                                                                                                          ggTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATCCATTTCGATgc         >  2:282191/1‑150 (MQ=255)                                                                                                                                                 gacagCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATCCATTTCGATGCGCACAGt  >  1:554030‑M2/6‑150 (MQ=255)                                                                                                                                                      cATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTtg                                                                                           <  2:285276/56‑1 (MQ=255)                                                                                                                                                      cATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTtg                                                                                           >  1:285276/1‑56 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TTCGGCCCGCGGGCGATCCGTGCTGCCTCGGTCCAGCAGGCCTGGGCCCGCCACTGGCCGTGGGCGTTCGACCCGTTCGACCACCTGGCGGTCATCGACTATGGCGACTGTCCCTTCGACAGCGGCACGCCGCAGTCGGTACCGGACAGCATCGAGGCCCATGCCGAGCACATTCTGCAGGCGGGTTGCGCCATGCTGACCCTTGGTGGCGACCACTTCATCAGCTACCCGCTGCTCAAGGCTCACGCCCGCCGCCATGGCCCGCTGGCGCTGATCCATTTCGATGCGCACAGT  >  NC_002947/2502908‑2503201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.