New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3152372	36 (1.560)	3 (0.140)	3/232	NT	8.1%	coding (484/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3152388	35 (1.630)					coding (500/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease

CCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCACGCCTGGGGGTGCAGTTCTCGCT  >  NC_002947/3152245‑3152535                                                                                                                                                |                                                                                                                                                    ccTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTgcgtgc                                                                                                                                               <  2:539373‑M2/150‑7 (MQ=255)           gCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCcgac                                                                                                                                     >  1:589381/1‑150 (MQ=255)                         cccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCACCCGGACGCGCATCGGCCTGGCGCGGCGTGCGGTGGCCGACGATCCCCGCgcggc                                                                                                                       <  1:539373/150‑1 (MQ=255)                         cccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCgcggc                                                                                                                       >  2:311651/1‑150 (MQ=255)                          ccGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCgcggcg                                                                                                                      >  2:147614/1‑150 (MQ=255)                           cGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCTGACGATCCCCGCGCGGCGa                                                                                                                     >  2:404592/1‑150 (MQ=255)                           cGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGa                                                                                                                     <  1:404592/150‑1 (MQ=255)                            gCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGAt                                                                                                                    <  2:167407/150‑1 (MQ=255)                            gCTGGAGCTGGGCGGCCTGCTGCTGGCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCGGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCCCGGCGAt                                                                                                                    >  1:513452/1‑150 (MQ=255)                                  gCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGt                                                                                                              <  1:65212/150‑1 (MQ=255)                                     gggCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCgg                                                                                                           <  2:589381/150‑1 (MQ=255)                                            ctgatggtgCCGCAGATCGCCCTGTTCGCCGTCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGTCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGc                                                                                                    <  2:192659/150‑1 (MQ=39)                                                   tgTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGa                                                                                             <  1:311651/150‑1 (MQ=255)                                                     tCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCGGCCTAgg                                                                                           <  2:289922/150‑1 (MQ=255)                                                       gCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGgt                                                                                         >  1:454547/1‑150 (MQ=255)                                                         aGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGgtgt                                                                                       <  1:373623/150‑1 (MQ=255)                                                           ttCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTgg                                                                                     <  1:103860/150‑1 (MQ=255)                                                              gACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCg                                                                                  <  1:572986/150‑1 (MQ=255)                                                               aCCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGGGGGTGTGGGCgg                                                                                 <  2:551076/150‑1 (MQ=255)                                                                 cTGTTCGCCACCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCggtg                                                                               >  1:389274/1‑150 (MQ=255)                                                                                  ggcggcggcCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCATGCGCATCGGCCTGGCGCTGCGTCGCCCGGCTGACTATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCgg                                                              <  1:346373/150‑1 (MQ=255)                                                                                   gcggcggcCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCggg                                                             <  1:358648/150‑1 (MQ=255)                                                                                           ccaggtggtGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGCGGGGGTGGGCGGGGATCTGGGCGGTGGCCGGGTGTGTCgg                                                     >  2:33105/4‑150 (MQ=255)                                                                                             tggtggTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGt                                                   <  2:454547/150‑1 (MQ=255)                                                                                                   tgCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTtggtgg                                             <  2:513452/150‑1 (MQ=255)                                                                                                       tCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTGTGTCGGGTTGGTGGCCgg                                         >  1:493963/1‑150 (MQ=255)                                                                                                             cTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccgcccagctccagcggggcgtcgctga                                   <  1:139220‑M2/150‑115 (MQ=255)                                                                                                             cTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGgctgct                                   >  1:162469/1‑150 (MQ=255)                                                                                                                       aaCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGGCGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGTTTGGTGGCCGGGCTGCTCTGGGGCGCa                         <  1:33105/150‑1 (MQ=255)                                                                                                                        aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCg                                                      >  1:588656/1‑120 (MQ=255)                                                                                                                        aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCg                                                      <  2:588656/120‑1 (MQ=255)                                                                                                                        aCCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCAc                        >  2:418798/1‑150 (MQ=255)                                                                                                                         ccGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCgg                                                     >  2:227264/1‑120 (MQ=255)                                                                                                                         ccGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCgg                                                     <  1:227264/120‑1 (MQ=255)                                                                                                                          cGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccg                                                            <  1:571059‑M2/112‑90 (MQ=255)                                                                                                                          cGCACGCGCATCGGCCTGGCGCTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccg                                                            >  2:571059‑M2/1‑23 (MQ=255)                                                                                                                                         cTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGt                                                            >  2:522958/1‑97 (MQ=255)                                                                                                                                         cTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGt                                                            <  1:522958/97‑1 (MQ=255)                                                                                                                                         cTGGCGCTGCGTGCGCTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCACGCCTGGGGGTGCAGTtc       >  2:328780/1‑150 (MQ=255)                                                                                                                                              gcTgcgtgcggttgaacagcaaggacagaagcaccaccagggccgccgccgttgcggcggcgaacaggtcgaactgcgacagcagcaggccgcccagctccagcggggcgtcgctgatggccagctccaggccgtgaacctgggcgcccc  >  2:139220‑M2/1‑3 (MQ=255)                                                                                                                                                |                                                                                                                                                    CCTGGAGCTGGCCATCAGCGACGCCCCGCTGGAGCTGGGCGGCCTGCTGCTGTCGCAGTTCGACCTGTTCGCCGCCGCAACGGCGGCGGCCCTGGTGGTGCTTCTGTCCTTGCTGTTCAACCGCACGCGCATCGGCCTGGCGCTGCGTGCGGTGGCCGACGATCCCCGCGCGGCGATGAGCGTCGGTATCCGCCTGCCGAGGGTGTGGGCGGTGGTCTGGGCGGTGGCCGGGTTTGTCGGGTTGGTGGCCGGGCTGCTCTGGGGCGCACGCCTGGGGGTGCAGTTCTCGCT  >  NC_002947/3152245‑3152535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.