| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3562695 = | 25 (1.080) | 4 (0.180) | 4/236 | NT | 16.1% | coding (1172/1296 nt) | PP_3146 | oxidoreductase |
| ? | NC_002947 | 3562720 = | 18 (0.820) | coding (1147/1296 nt) | PP_3146 | oxidoreductase | |||||
TCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATGCCGATCATGCCACCCCACTG > NC_002947/3562584‑3562855 | tCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTc > 2:218613/1‑150 (MQ=255) ggTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCa < 1:12594/150‑1 (MQ=255) cccAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGc > 2:605873/1‑150 (MQ=255) ccAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGcc < 1:370974/150‑1 (MQ=255) gcagGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGc > 1:167109/1‑150 (MQ=255) cagcaccctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCcagca > 1:25701‑M1/77‑104 (MQ=255) cagcaccctaacgtgtattacgcccagggctattccgggcacgggctgaacgtgacgcactggacggcgaaactgcTGGCCGAGGGCGATGCTTTCGGCcagca < 2:25701‑M1/28‑1 (MQ=255) cagGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGcc > 2:195371/1‑150 (MQ=255) gcAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGccc < 1:242208/140‑1 (MQ=255) gcAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGccc > 2:242208/1‑140 (MQ=255) ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGccc > 1:227414/1‑116 (MQ=255) ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGccc < 2:227414/116‑1 (MQ=255) ttGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTa > 1:293344/1‑150 (MQ=255) gccAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTg > 1:108768/1‑150 (MQ=255) ccAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGtca < 1:330040/150‑3 (MQ=255) ggCGCTGAACACATCCAGGCCGTGGCCGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCTGGCGCCCGACCTGAgg < 1:262428/150‑1 (MQ=255) tCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCg < 1:197343/150‑1 (MQ=255) tCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCg > 1:565464/1‑150 (MQ=255) ccGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATg > 2:374227/1‑150 (MQ=255) tgctggccgaaagcatcgccctcggccaGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTg > 1:25701‑M2/29‑104 (MQ=255) tgctggccgaaagcatcgccctcggccaGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTg < 2:25701‑M2/76‑1 (MQ=255) tggccgaaagcatcgccctcggccaGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATa < 2:426658‑M2/61‑1 (MQ=255) tggccgaaagcatcgccctcggccaGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATa > 1:426658‑M2/26‑86 (MQ=255) TGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATa > 2:95278‑M1/1‑71 (MQ=255) TGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATa < 1:95278‑M1/71‑1 (MQ=255) GCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGc < 1:536253‑M1/97‑1 (MQ=255) GCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGc > 2:536253‑M1/1‑97 (MQ=255) gATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATGCCGATCATGCCACCCCACTg < 1:218613/150‑1 (MQ=255) aGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAgg > 2:497667‑M2/2‑71 (MQ=255) aGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAgg < 1:497667‑M2/70‑1 (MQ=255) | TCACGCAAGCGGTACCACAACATGCCCAGTGCCAGCAGGGGTGAGCGCAGGGCCTTGCCGCCAGGGAAGGTCAGGTGCGGCACGGCGCTGAACACATCCAGGCCGTGGCTGTGGCCGAGGGCGATGCTTTCGGCCAGCAGTTTCGCCGTCCAGTGCGTCACGTTCAGCCCGTGCCCGGAATAGCCCTGGGCGTAATACACGTTAGGGTGCTGGTTCAGGCGCCCGACCTGAGGGAAACGGTTGGCGGTGATGCCGATCATGCCACCCCACTG > NC_002947/3562584‑3562855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |