New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3775020 =	25 (1.080)	4 (0.180)	3/236	NT	14.9%	intergenic (‑4/+47)	PP_3335/PP_3336	hypothetical protein/hypothetical protein
	?	NC_002947	3775055 =	22 (1.010)					intergenic (‑39/+12)	PP_3335/PP_3336	hypothetical protein/hypothetical protein

GGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAA  >  NC_002947/3774906‑3775193                                                                                                                                                      |                                                                                                                                           cctgtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                                                            >  1:548105‑M1/115‑150 (MQ=255)    gtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTc                                                                                                                                         >  1:148231‑M1/112‑150 (MQ=255)          cAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCa                                                                                                                                   <  1:576324/150‑1 (MQ=255)            aCAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCggg                                                                                                                                 >  2:412945/1‑150 (MQ=255)                     cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa                                                                                                                         >  2:341461/1‑149 (MQ=255)                     cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa                                                                                                                         <  1:341461/149‑1 (MQ=255)                                 aCGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGa                                                                                                            <  1:335740/150‑1 (MQ=255)                                             aGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGtt                                                                                                <  2:269640/150‑1 (MQ=255)                                              ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                                                            <  2:449971‑M1/36‑1 (MQ=255)                                              ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                                                            >  1:449971‑M1/70‑105 (MQ=255)                                                            cTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCcagca                                                                                 >  2:121575/1‑150 (MQ=255)                                                                      cAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGc                                                                       <  1:456997/150‑1 (MQ=255)                                                                         ggTACGAGACAGGGTGTGCTCCGGGGTACGGCGAGCCATCGGCAGGCCGACGCCCCGGTTTTAGCTGGTGCGGCCTGGGTCCTTGGAGGTCAGGCGATCACGTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGAAGTGCCGGGGCGaa                                                                    <  1:301391/150‑1 (MQ=255)                                                                            aCGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGc                                                                 <  2:246083/150‑1 (MQ=255)                                                                                    tCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAAc                                                         >  2:123039/1‑150 (MQ=255)                                                                                                gggTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTg                                             <  1:123039/150‑1 (MQ=255)                                                                                                      ggCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGAc                                       >  1:365447/1‑150 (MQ=255)                                                                                                       gCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGACACGGGGGTTGATCGAGGGCCAGCAGTGCCGGGGCGATTGCACCAGAACAACGGGTTGCTGGTCGACa                                      >  2:288998/1‑150 (MQ=255)                                                                                                           gCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGgca                                  <  1:121575/150‑1 (MQ=255)                                                                                                            ccATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGAGGGTTGCTGGTCGACAGgcag                                 >  2:419709/1‑150 (MQ=255)                                                                                                               gacccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGcac                              >  1:148231‑M2/40‑150 (MQ=255)                                                                                                                  ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCgggg                                                                        <  2:449971‑M2/69‑1 (MQ=255)                                                                                                                  ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCgggg                                                                        >  1:449971‑M2/37‑105 (MQ=255)                                                                                                                  ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCAcagg                           >  1:548105‑M2/37‑150 (MQ=255)                                                                                                                               ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg              >  2:180039/1‑150 (MQ=255)                                                                                                                               ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg              >  2:287957/1‑150 (MQ=255)                                                                                                                               ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg              >  1:591261/1‑150 (MQ=255)                                                                                                                               ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGATCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg              >  1:133886/1‑150 (MQ=255)                                                                                                                                  cTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGcc           <  2:108357/150‑1 (MQ=255)                                                                                                                                  cTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGcc           <  2:382967/150‑1 (MQ=255)                                                                                                                                           ggTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCaaa  <  2:365447/150‑1 (MQ=255)                                                                                                                                           ggTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCaaa  <  1:287957/150‑1 (MQ=255)                                                                                                                                                 gcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGaa       <  2:132116‑M2/134‑1 (MQ=255)                                                                                                                                                 gcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGaa       >  1:132116‑M2/6‑139 (MQ=255)                                                                                                                                                      |                                                                                                                                           GGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAA  >  NC_002947/3774906‑3775193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.