New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4561348 =30 (1.300)4 (0.180) 4/234 NT 13.8% coding (245/1404 nt) PP_4048 hypothetical protein
?NC_002947 4561414 = 22 (1.020)coding (179/1404 nt) PP_4048 hypothetical protein

CGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGC  >  NC_002947/4561266‑4561562
                                                                                                                                                    |                                                                                                                                                    
cGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCCCCCTACCAGCTGGGTCGGCTGCGTCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAg                                                                                                                                                     <  1:75371/150‑1 (MQ=255)
cGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAg                                                                                                                                                     <  1:274713/150‑1 (MQ=255)
        ccacAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACggg                                                                                                                                             <  2:355971/150‑1 (MQ=255)
              cgcCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGa                                                                                                                                       <  1:288565/150‑1 (MQ=255)
                ccGATGATCGGCGCGATCAGGGTCATCAGGCAGGCAACCAGCAACAACCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGc                                                                                                                                     >  1:321018/1‑150 (MQ=255)
                         ggCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATcacc                                                                                                                            >  1:362946/1‑150 (MQ=255)
                         ggCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATcacc                                                                                                                            >  2:228208/1‑150 (MQ=255)
                                   gggTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCa                                                                                                                  <  1:258189/150‑1 (MQ=255)
                                          caggcaggCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGa                                                                                                           <  2:601639/150‑1 (MQ=255)
                                           aggcaggcCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGAc                                                                                                          >  2:235563/1‑150 (MQ=255)
                                                 gcCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCAAAATCACCCCCCCCGGCACCAACGACagcagc                                                                                                    <  2:590090/150‑1 (MQ=255)
                                                    accaGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATg                                                                                                 >  2:608260/1‑150 (MQ=255)
                                                        gCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCgg                                                                                             >  2:569414/1‑150 (MQ=255)
                                                               ccACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGAc                                                                                      >  2:313494/1‑150 (MQ=255)
                                                                     ttGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCt                                                                                >  1:96796/1‑150 (MQ=255)
                                                                         cATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGt                                                                            <  2:321018/150‑1 (MQ=255)
                                                                                     TGCGGCGTTGCCTGGCTGGCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCg                                                                >  2:15852‑M1/1‑150 (MQ=255)
                                                                                     TGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGc                                                                                                                                     >  2:387338‑M1/1‑81 (MQ=255)
                                                                                     TGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGc                                                                                                                                     <  1:387338‑M1/81‑1 (MQ=255)
                                                                                     TGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCg                                                                <  2:440433‑M1/150‑1 (MQ=255)
                                                                                     TGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCg                                                                >  1:228208‑M1/1‑150 (MQ=255)
                                                                                         gtgtgcctgcgcctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCaa                                                            >  1:486662‑M2/60‑150 (MQ=255)
                                                                                          tgtgcctgcgcctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCaaa                                                           <  2:486662‑M2/92‑1 (MQ=255)
                                                                                               ctgcgcctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTc                                                        >  1:311014‑M2/54‑148 (MQ=255)
                                                                                               ctgcgcctgggcaagcgctacgcggcggacggcagccaggcaacgccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTc                                                        <  2:311014‑M2/95‑1 (MQ=255)
                                                                                               ccTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGc                                                      <  1:235563/150‑1 (MQ=255)
                                                                                                    cTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGc                                                 <  1:608260/150‑1 (MQ=255)
                                                                                                     tGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCa                                                >  1:105788/1‑150 (MQ=255)
                                                                                                         gTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCGCCTCGGCAAACTCGCCAAGCACCAg                                            <  2:96796/150‑1 (MQ=255)
                                                                                                             gccgcGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCa                                        >  2:174782/1‑150 (MQ=255)
                                                                                                                            cccAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAg                         <  1:174782/150‑1 (MQ=255)
                                                                                                                               aGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGAAGACCCCGCTCAGTGGCCGCTCCTCGGCACACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCg                      >  2:261872/1‑150 (MQ=255)
                                                                                                                                ggCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGt                     <  1:313494/150‑1 (MQ=255)
                                                                                                                                       gCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAg                                            <  2:508476/120‑1 (MQ=255)
                                                                                                                                       gCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAg                                            >  1:508476/1‑120 (MQ=255)
                                                                                                                                       gCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGcagc                                  <  2:502954/130‑1 (MQ=255)
                                                                                                                                       gCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGcagc                                  >  1:502954/1‑130 (MQ=255)
                                                                                                                                                   cAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGc  >  1:363123‑M2/2‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CGCCCCCACCACAGCGCCGATGATCGGCGCGATCAGGGTCATCAGGCAGGCCACCAGCAACACCCACTCTTGCCATTCCGGCGGCTGCGGCGTTGCCTGGCTGCCGTCCGCCGCGTAGCGCTTGCCCAGGCGCAGGCACACCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGC  >  NC_002947/4561266‑4561562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.