| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4643020 | 16 (0.690) | 4 (0.190) | 3/232 | NT | 20.1% | intergenic (+20/‑160) | PP_4107/PP_4108 | LysR family transcriptional regulator/4‑aminobutyrate aminotransferase |
| ? | NC_002947 | = 4643043 | 17 (0.790) | intergenic (+43/‑137) | PP_4107/PP_4108 | LysR family transcriptional regulator/4‑aminobutyrate aminotransferase | |||||
AAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGATAATAAGAAACTCGAACAAGGTCCGCGTGCCCCATGAACCAGG > NC_002947/4642895‑4643189 | aaGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCTCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAa < 1:408636‑M2/150‑2 (MQ=255) ttCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCa > 1:479919/1‑150 (MQ=255) ttCATCGAGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCa > 2:256984/1‑150 (MQ=255) aTCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAAcc > 1:405025/1‑150 (MQ=255) cGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCa < 1:398351/150‑1 (MQ=255) ggCCGAAGTGCCCAAGATCAAGGCCTTCGTGCAGTGGGTCCGCGAGCGGGAGGCTGAAGGCGATCGATTTGACCTACCCCGGCCTCTGGCAGAAGCGGGCTTGCGCGCGAAGAGGCCAGCACAGCCAAGCCAAAAAACCCGTTAGATAAc > 2:602423/1‑150 (MQ=255) cGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCGACCCAAAAAACCGGCTAGATCACGaa < 1:355774/150‑1 (MQ=255) agCCCAAGAACAGGGCATTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGGGATTGATTCGCCCTGCACCGGCCTCTGCCAGGAGCGGGCTTGCCTGCTAATAGGCCATGACAAAAAAAACAAAAAACCGGCTAGATCACGAATCCAt < 2:70621/149‑1 (MQ=255) cccAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCAAACCCAAAAAACCGGCTAGATCACGAATCCATgg < 1:373307/150‑1 (MQ=255) cccAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCAAACCCAAAAAACCGGCTAGATCACGAATCCATgg > 2:373307/1‑150 (MQ=255) gCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAAt < 2:405025/150‑1 (MQ=255) tGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCAc < 1:595409/121‑1 (MQ=255) tGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCAc > 2:595409/1‑121 (MQ=255) gattgattTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTg > 2:189677/1‑150 (MQ=255) tGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGAtaataa < 1:189677/150‑1 (MQ=255) tGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGAtaataa < 2:479919/150‑1 (MQ=255) cTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccggggcaggtcaaatcaatcgccttcagccacccgctcccggatccactgcacgaaggccctgatcttgggcacttcggccgcatgctcggcatgcgcgatgaagtg < 1:172956‑M2/150‑114 (MQ=255) cccGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggc > 2:471350‑M2/1‑33 (MQ=255) cccGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggc < 1:471350‑M2/39‑7 (MQ=255) ggggccTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccggggcaggtcaaatcaatagccttcagccacccgctcccggatccactgcacgaaggccctgatcttgggcacttcggccgcatgctcggcatgcgcgatgaagtgcctcc < 2:307617‑M2/148‑119 (MQ=255) ccGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccgg < 1:175853‑M2/41‑10 (MQ=255) ccGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccgg > 2:175853‑M2/1‑32 (MQ=255) cGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccggggcaggtcaaatcaatcgccttcagccacccgctcccggatccactgcacgaaggccctgatcttgggcacttcggccgcatgctcggcatgcgcgatga > 2:381656‑M2/1‑31 (MQ=255) cGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAagaggccggggcaggtcaaatcaatcgccttcagccacccgctcccggatccactgcacgaaggccctgatcttgggcacttcggccgcatgctcggcatgcgcgatga < 1:381656‑M2/140‑110 (MQ=255) ctctGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGATAATAAGAAACTCGAACAAg < 1:256984/150‑1 (MQ=255) gCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGATAATAAGAAACTCGAACAAGGTCCGCGTGCCCCATGCAc > 2:125727/1‑150 (MQ=255) gcgAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGATAATAAGAAACTCGAACAAGGTCCGCGTGCCCCATGAACCAgg > 2:253922/1‑150 (MQ=255) | AAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGAATGATCGCAATCGAATAATTCGTTTGCGGAATAACCCGCCGACACGCTTGGATAATAAGAAACTCGAACAAGGTCCGCGTGCCCCATGAACCAGG > NC_002947/4642895‑4643189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |