New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093434 =	29 (1.250)	4 (0.180)	4/238	NT	14.9%	coding (236/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093542 =	18 (0.820)					coding (128/981 nt)	PP_4482	AraC family transcriptional regulator

GCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGA  >  NC_002947/5093399‑5093690                                                                                                                                                |                                                                                                                                                     gtgcatccggatgtggtctacgagttggtcttcctGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGa                                                                                                                                                >  1:401185‑M1/36‑150 (MQ=255)   ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg                                                                                                                                                     <  2:503066/143‑1 (MQ=255)   ttGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAg                                                                                                                                                     >  1:503066/1‑143 (MQ=255)             cTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGa                                                                                                                                    >  1:526113/1‑150 (MQ=255)                     gCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGCCAGCCCTCCAGGCGGACGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGAACCACTCGTAGACCACATcc                                                                                                                            >  1:192201/1‑150 (MQ=255)                             tcttcctgcaggccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGcac                                                                                                                    >  1:401185‑M2/116‑150 (MQ=255)                                        gccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGcca                                                                                                         >  1:482310‑M2/105‑150 (MQ=255)                                               gtcgGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa                                                                                                  <  1:589589/150‑1 (MQ=255)                                                    ccAGCAGAAAGAGCTTGTGTCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCACCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACtt                                                                                             >  1:171538/1‑150 (MQ=255)                                                      agcagAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa                                                                                                  >  1:432672/1‑143 (MQ=255)                                                      agcagAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCaa                                                                                                  <  2:432672/143‑1 (MQ=255)                                                                     gctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg                                                                            <  2:482310‑M2/75‑1 (MQ=255)                                                                             cTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTc                                                                                         <  1:200189/129‑1 (MQ=255)                                                                             cTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTc                                                                                         >  2:200189/1‑129 (MQ=255)                                                                              tCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGc                                                                   >  2:454410/1‑150 (MQ=255)                                                                                        accggccgcctggagggctgccacaagctctttctgctggccgacgagccgcctgcAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTgg                                                         <  2:401185‑M2/94‑1 (MQ=255)                                                                                         ggTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg                                                                            <  1:158722/130‑1 (MQ=255)                                                                                         ggTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAgg                                                                            >  2:158722/1‑130 (MQ=255)                                                                                          gTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGc                                                       <  1:454410/150‑1 (MQ=255)                                                                                              aCGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGa                                                   >  1:322338/1‑150 (MQ=255)                                                                                                   tagCCCGGCAGCCGCCAGGCGCCTTCCTGCGTAGGCTCGGCCTGCAGGAAGACCAACTAGTAGAACCCATCCGGATGAACACGCCGCGCCACCAGCAAAACTTCCTCGGCTACCGCCAGGGGCAAAGGCCTGGTGCTGGGCCAGCTgaga                                              >  1:186256/3‑150 (MQ=255)                                                                                                          gCACCCGCACGGCGCCTTCCTGCGCATTCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGa                                       <  2:343409/150‑1 (MQ=255)                                                                                                              ccgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCg                                   <  2:322338/150‑1 (MQ=255)                                                                                                               cgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCgg                                                                                                                          >  1:591794/1‑62 (MQ=255)                                                                                                               cgccAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCgg                                                                                                                          <  2:591794/62‑1 (MQ=255)                                                                                                                                     gCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTc            >  1:296315/1‑150 (MQ=255)                                                                                                                                               cAGGAATCCCAACTCGGAGCCCATATCCTGAGGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGa  <  2:192201‑M2/149‑1 (MQ=255)                                                                                                                                               cAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGa  <  2:51596‑M2/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     GCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACTTCCTCGGCCAACGCCAGGGTCAAAGGCCTGGTGCTGGGCCAGATGAGAAAACCGATTCGCTGGGTGGTCATAGGGTACGGTCCGAAACCTGA  >  NC_002947/5093399‑5093690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.