| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5903842 | 30 (1.300) | 8 (0.400) | 7/218 | NT | 21.3% | intergenic (+42/+65) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | = 5903870 | 33 (1.640) | intergenic (+70/+37) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
ATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCG > NC_002947/5903723‑5904015 | agtgttgccAATCCCGTGAGGGCTGGATTGGTCAGGAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGATGGCGCCTTCCACGGCATGCCCGCGCCCACAGGCCTGACCGCAACCCTGGAGGCTGTGAGG‑Tcc > 2:163850‑M2/3‑148 (MQ=255) ccAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCACACAGGGCTCACCACAACCCTGAAGGGAGTGAGG‑Tccatgtggg < 2:250855‑M2/150‑10 (MQ=255) aaTCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTCGGG‑Tccctgtgggag < 2:121939‑M2/150‑12 (MQ=255) gATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcacgcccgctcc > 2:391001‑M2/1‑123 (MQ=255) gTCAGAAGTATCAGCGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc < 2:340561/150‑1 (MQ=255) aGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAg < 1:165185/150‑1 (MQ=255) aGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAg < 2:479397/150‑1 (MQ=255) aaGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGt > 1:377425/1‑150 (MQ=255) ggACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCg > 1:323282/1‑148 (MQ=255) ggACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCg < 2:323282/148‑1 (MQ=255) aCTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGc > 2:330621/1‑150 (MQ=255) tCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGc > 1:27069/1‑140 (MQ=255) tCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGc < 2:27069/140‑1 (MQ=255) cacaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCAc < 1:330621/150‑1 (MQ=255) ggATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGcc < 2:377425/150‑1 (MQ=255) aTGCGGCTTGGCTTTGAACCGGTGCTTGACCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCgg < 1:250855/150‑1 (MQ=38) tATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCtt < 2:395945/150‑1 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGAc < 2:508398/121‑1 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGAc > 1:508398/1‑121 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTg > 1:97320/1‑150 (MQ=255) aTCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCt > 1:344165/1‑150 (MQ=255) ccGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGGGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc < 1:121939/150‑1 (MQ=255) ccGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc < 1:306518/150‑1 (MQ=255) gCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGa > 1:81518/1‑150 (MQ=255) tCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAACGTTGGCTGCAGCACCCTCTTCGATc > 1:245067/1‑150 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggc < 2:142998‑M2/150‑115 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAc > 2:50979/1‑137 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAc < 1:50979/137‑1 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc > 1:226866/1‑150 (MQ=255) cacaGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc > 1:62668/1‑150 (MQ=255) ggCTCACCACAACCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggcaacaat < 1:385518‑M2/150‑121 (MQ=255) tCACCACAACCCTGAAGGCTGTGGTGAGccctgtgggagcgggcatgcccgcgaaggctccagcaccgatt < 2:413996‑M2/71‑44 (MQ=255) tCACCACAACCCTGAAGGCTGTGGTG‑Agccctgtgggagcgggcatgcccgcgaaggctccagcaccgatt > 1:413996‑M2/1‑27 (MQ=255) ccacAACCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggcaacaatgtaccg > 1:142998‑M2/1‑24 (MQ=255) cacaACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc < 1:615963/138‑1 (MQ=255) cacaACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc > 2:615963/1‑138 (MQ=255) cacaACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGcc > 1:213302/1‑150 (MQ=255) caACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCtt < 1:425151/150‑1 (MQ=255) aaCCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtgga > 1:394658‑M2/1‑20 (MQ=255) aaCCCTGAAGGCTGTGAGG‑Tccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtgga < 2:394658‑M2/90‑71 (MQ=255) gAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCGCCCGCGTCGATCGCCTGCTGAATCGCCTTGcgacga > 2:49696/1‑150 (MQ=255) tgtgAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAAt < 2:8991/131‑1 (MQ=255) tgtgAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAAt > 1:8991/1‑131 (MQ=255) tgAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTc < 2:62668/150‑1 (MQ=255) gAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCg > 2:408736/1‑150 (MQ=255) | ATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGG‑TCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCG > NC_002947/5903723‑5904015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |