New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1906749	21 (0.910)	4 (0.220)	4/198	NT	15.2%	intergenic (+47/+81)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 1906791	28 (1.530)					intergenic (+89/+39)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

GAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG  >  NC_002947/1906642‑1906940                                                                                                                                                      |                                                                                                                                                      gagGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCtgtg                                                                                                                                                       <  1:304070/150‑1 (MQ=255)  aGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGg                                                                                                                                                      >  2:280298‑M2/1‑149 (MQ=255)               ggCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGggagcgggcttgcc                                                                                                                                         >  1:80878‑M2/1‑136 (MQ=255)                                ggggAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACATAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGCGCGGGCTTGCCCGCAAAGAGGCCAGcac                                                                                                                        >  1:290155/1‑150 (MQ=255)                                       cGGTGGAGCTGGCGGTGGAATGATACCCCTGTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGa                                                                                                                 <  1:493987/150‑1 (MQ=255)                                                          cTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgc                                                                                              <  1:56328/150‑1 (MQ=255)                                                          cTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAACCAGCTCCTACCAAATCTGCACCGGCTTGTAATACAGCACCGACCCTGTGGGACCTGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACGAGAAAACCCACCCCCgc                                                                                              >  2:56623/1‑150 (MQ=255)                                                                 gccTGTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTgc                                                                                       >  1:21664/2‑150 (MQ=255)                                                                  ccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACaa                                                                                                                      <  2:290404/118‑1 (MQ=255)                                                                  ccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACaa                                                                                                                      >  1:290404/1‑118 (MQ=255)                                                                                       tctTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAg                                                                 >  2:441034/1‑150 (MQ=255)                                                                                        ctTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAgg                                                                <  2:349089/150‑1 (MQ=255)                                                                                         ttCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGc                                                               >  1:364203/1‑150 (MQ=255)                                                                                                gCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccac                                                        >  1:196322/1‑150 (MQ=255)                                                                                                  aaGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGggagcgggcttgcccgcgaagaggccggcacaggcagcaaaggggtatcaggccaccgccagctccaccgcctcccccttcaaccgcaccggccaca                                                      <  1:390459‑M2/150‑98 (MQ=255)                                                                                                  aaGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccacca                                                      >  1:584076/1‑150 (MQ=255)                                                                                                     cccGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGggagcgggcttgcccgcgaagaggccggcacaggcagcaaaggggtatcaggccaccgccagctccaccgcctcccc                                                                          <  1:423474‑M2/127‑78 (MQ=255)                                                                                                     cccGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGggagcgggcttgcccgcgaagaggccggcacaggcagcaaaggggtatcaggccaccgccagctccaccgcctcccc                                                                          >  2:423474‑M2/1‑50 (MQ=255)                                                                                                     cccGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacca                                                   >  1:384270/1‑150 (MQ=255)                                                                                                          tCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt                                                                                         >  1:250378/1‑107 (MQ=255)                                                                                                          tCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt                                                                                         <  2:250262/107‑1 (MQ=255)                                                                                                          tCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt                                                                                         <  2:250378/107‑1 (MQ=255)                                                                                                          tCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt                                                                                         >  1:250262/1‑107 (MQ=255)                                                                                                            cTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGcc                                            >  1:554563/1‑150 (MQ=255)                                                                                                            cTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGcc                                            >  1:397620/1‑150 (MQ=255)                                                                                                                 gAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATgc                                       >  2:471107/1‑150 (MQ=255)                                                                                                                           cGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCgtgt                             <  2:584076/150‑1 (MQ=255)                                                                                                                             ccTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCt                           >  1:427148/1‑150 (MQ=255)                                                                                                                               ttGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGt                         >  2:52441/1‑150 (MQ=255)                                                                                                                                         gcgcCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCAc               <  2:21664/150‑1 (MQ=255)                                                                                                                                              gACCCTGTGggagcgggcttgcccgcgaagaggccggcacaggcagcaaaggggtatcaggccaccgccagctccaccgcctcccccttcaaccgcaccggccacacccgcaacctctgcccggcatcctccagacactccccactcagc          >  2:390459‑M2/1‑9 (MQ=255)                                                                                                                                              gACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccac                                                     <  1:509705/107‑1 (MQ=255)                                                                                                                                              gACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccac                                                     >  2:509705/1‑107 (MQ=255)                                                                                                                                               ccccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc         <  1:441034/149‑1 (MQ=255)                                                                                                                                               aCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc         <  2:554563/150‑1 (MQ=255)                                                                                                                                                 ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGa       >  1:574566/1‑150 (MQ=255)                                                                                                                                                    gtgGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGc    <  1:471107/150‑1 (MQ=255)                                                                                                                                                     tgGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACGACCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCg   >  1:357698/1‑150 (MQ=255)                                                                                                                                                      gggAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCgg  <  2:384270/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG  >  NC_002947/1906642‑1906940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.