| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,458,128 | C→A | 17.4% | intergenic (+21/+19) | PP_1276 → / ← algA | hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,458,128 | 0 | C | A | 17.4% | 51.4 / 3.1 | 23 | intergenic (+21/+19) | PP_1276/algA | hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (9/10); new base A (2/2); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 | |||||||||||
TGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCGATGATC > NC_002947/1457990‑1458270 | tGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCGCGCCCCTGGTCAGCCCAGGGGCGAg > 2:562578/1‑150 (MQ=255) acaAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAg < 2:476411/150‑1 (MQ=255) tCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTGGCCCCTGGTCAGCCCAGGGGGGAGTCAGCATTTACTGCGCGATGGTCTTc < 1:183905/150‑1 (MQ=255) cGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCa > 2:571509/1‑150 (MQ=255) gatgatTTGCAGCGTCCTTTTAGGGTGGTGGGTGGCCCATTCGACATTTACGTCATAGCTCCGAGCGTTGAATAAACAGGTTCGTCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCTGCGCTc < 2:221909/150‑1 (MQ=255) gatgatTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTc > 1:553165/1‑150 (MQ=255) cGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGa > 2:71549/1‑150 (MQ=255) gggTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCa < 1:571509/150‑1 (MQ=255) ccATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATac < 1:513732/139‑1 (MQ=255) ccATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATac > 2:513732/1‑139 (MQ=255) ccATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGaa < 2:553165/150‑1 (MQ=255) ccATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGaa > 2:552203/1‑150 (MQ=255) cATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAg > 2:2937/1‑150 (MQ=255) aTTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAgc < 1:71549/150‑1 (MQ=255) aTAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAACCGCTCGATGTCATCCTc > 2:244832/1‑150 (MQ=255) gacTCGCCCCTGGGCTGACCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCAc > 2:424684/3‑150 (MQ=255) tCGCCCCTGGGCTGACCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATac > 1:584049/1‑94 (MQ=39) tCGCCCCTGGGCTGACCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATac < 2:584049/94‑1 (MQ=39) ccccTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCgat < 1:552203/150‑1 (MQ=255) ccccTGGGCTGACCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCgat < 1:424684/150‑1 (MQ=255) cTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGaa < 2:441027/99‑1 (MQ=255) cTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGaa > 1:441027/1‑99 (MQ=255) tGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCGATGAtc < 1:2937/150‑1 (MQ=255) | TGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCGATGATC > NC_002947/1457990‑1458270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |