Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,761,970 | A→T | 20.7% | N359I (AAC→ATC) ‡ | PP_1567 → | capsid protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,761,970 | 0 | A | T | 20.7% | 60.6 / 11.5 | 29 | N359I (AAC→ATC) ‡ | PP_1567 | capsid protein |
Reads supporting (aligned to +/- strand): ref base A (10/13); new base T (2/4); total (12/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
TGGGCGGACATCGAGCTGACCAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCAGAGTCGTTCGTT > NC_002947/1761825‑1762112 | tGGGCGGACATCGAGCTGACCAAGGACGCCAAAAACGCTTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGCGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATc > 1:452872/1‑150 (MQ=255) cGGACATCGAGCTGACCAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGTTCATcgcgc < 2:171828/150‑2 (MQ=255) ttaCATCGAGCTGACCAAGGCCGTCACCGGCTCCTACATCTGGGTGCATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGc < 2:283975/148‑1 (MQ=255) aCATCGAGCTGACCAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGTTCATcgcgccta < 2:196892/150‑5 (MQ=255) aTCGAGCTGACCAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAg < 2:11508/150‑1 (MQ=255) cAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAATGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACcg > 1:273242/1‑150 (MQ=255) cAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACcg > 2:104586/1‑150 (MQ=255) gACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAg < 1:104586/150‑1 (MQ=255) cAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGaa > 1:341012/1‑117 (MQ=255) cAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGaa < 2:341012/117‑1 (MQ=255) aaCGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCg > 2:533336/1‑150 (MQ=255) aCGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCgg < 1:94916/150‑1 (MQ=255) tACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAg < 2:182619/150‑1 (MQ=255) tACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAg < 2:104550/150‑1 (MQ=255) cTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGtctc < 2:330787/150‑1 (MQ=255) cAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGt > 2:111452/1‑150 (MQ=255) ggAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGa > 1:408320/1‑150 (MQ=255) ggcggcGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAAc < 1:533336/150‑1 (MQ=255) cAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCct < 1:399242/150‑1 (MQ=255) cAACGCGGTGCCAGAAGGCGAGTTCCTGCCAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCct > 1:173775/1‑150 (MQ=255) aGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGt > 1:539847/1‑150 (MQ=255) cTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCagag < 2:408320/150‑1 (MQ=255) ggTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCAGAGtc < 1:111452/150‑1 (MQ=255) gggccgcgATGTTCATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCTGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCgaggag > 2:28538/5‑116 (MQ=255) gggccgcgATGTTCATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCTGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCgaggag < 1:28538/112‑1 (MQ=255) ggCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCAGAGtcgttc < 2:381287/150‑1 (MQ=255) ccgcgATGTTCATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCctg < 1:599880/118‑1 (MQ=255) ccgcgATGTTCATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCctg > 2:599880/2‑119 (MQ=255) gcgATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCAGAGTcgttcgtt > 2:566785/1‑150 (MQ=255) aTGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCgag > 1:533226/1‑105 (MQ=255) aTGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCgag < 2:533226/105‑1 (MQ=255) | TGGGCGGACATCGAGCTGACCAAGGACGCCAACGGCTCCTACATCTGGGTGAATGTCCAGGAAGGCGGCGTACAGCGCCTGTGGAAGCTGCCGGTGGTGGACAGCAACGCGGTGCCAGAAGGCGAGTTCCTGGTAGGCGCGATGAACATCGCGGCCCAGGTGTTCGACCGCGAGGAAGCGGCTGTCGAGGTCTCCACCGAAGACGGTGACAACTTCCGCACCAACATGGTGACCATCCGCGCCGAGGAGCGCCTGGCGCTGGCGGTCTACCGCCCAGAGTCGTTCGTT > NC_002947/1761825‑1762112 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |