| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 184,101 | G→T | 17.3% | S154R (AGC→AGA) | PP_0160 ← | ferrioxamine receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 184,101 | 0 | G | T | 17.3% | 53.4 / 3.4 | 23 | S154R (AGC→AGA) | PP_0160 | ferrioxamine receptor |
| Reads supporting (aligned to +/- strand): ref base G (13/6); new base T (2/2); total (15/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
CGTGTAGCGCATTGCTTGGGCAACGGTCTGAGAGCCCTGATCATCCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGGCGCAG > NC_002947/183954‑184247 | cGTGTAGCGCATTGCTTGGGCAACGGTCTGAGAGCCCTGATCATCCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCAtgct < 1:217415/150‑1 (MQ=255) cAACGGTCTGAGAGCCCTGATCATCCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAggg < 2:149049/150‑1 (MQ=255) gagaGCCCTGATCATCCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTAc < 1:17481/150‑1 (MQ=255) tcatcCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATTCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGgtg > 1:187799/1‑150 (MQ=255) tcatcCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATTCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGgtg > 1:492453/1‑150 (MQ=255) tcCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCt < 2:438058/150‑1 (MQ=255) gCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGa < 2:415638/113‑1 (MQ=255) gCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGa > 1:415638/1‑113 (MQ=255) tagaCTGATTGGGATGTCTCCACCGAGGGCATGCTGGTCTTGGTCGCCCCCTGGCTGTGCGTGGCGTTGTAACCCTCCTTTCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGa < 2:492453/149‑1 (MQ=255) gagaCTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGTCACCTGGATGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGGGTCTGGCAATGCCAGGGCGGCGTTCTGa > 1:102560/1‑150 (MQ=255) gagaCTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATTCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGa < 2:187799/150‑1 (MQ=255) gagaCTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGa > 1:413450/1‑150 (MQ=255) tGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTgcag < 1:263650/150‑1 (MQ=255) aaGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTa > 1:477355/1‑150 (MQ=255) aGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTAc > 2:381016/1‑150 (MQ=255) gTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTgg < 2:413450/150‑1 (MQ=255) aCCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTcc > 1:492334/1‑150 (MQ=255) tgtgCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGc > 2:296130/1‑150 (MQ=255) tgCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCAAGACTGACGGCTTCCAGTCCGCTg > 2:34895/1‑150 (MQ=255) aaCCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGGCCGCTGCCATTCAGCAACt > 2:404337/1‑150 (MQ=255) ccTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGgc > 1:159140/1‑150 (MQ=255) cTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGgcg > 2:241003/1‑150 (MQ=255) tCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGgcgc > 1:445991/1‑150 (MQ=255) cATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGGCGCAg > 2:9497/1‑150 (MQ=255) | CGTGTAGCGCATTGCTTGGGCAACGGTCTGAGAGCCCTGATCATCCATTTGCTGGCGAGTAACTACCGAGACTGATTGGGATGTCTCCACCAAGGGCATGCTGGTCTTGGTCGCCACCTGGCTGTGCGTGGCGTTGTAACCCTCCATGCTGCCCAGTGCGTTGCCGAGGGAGAAACTACGGATGTCGGTGTCTGGCAATGCCAGGGCGGCGTTCTGACGCTGTGCCTGCAGCACATAGTTACGTCCCCCCTGGCTGACGGCTTCCAGTCCGCTGCCATTCAGCAACTGGCGCAG > NC_002947/183954‑184247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |