| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,982,924 | A→G | 15.4% | Q278R (CAG→CGG) | PP_1775 → | metallo‑beta‑lactamase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,982,924 | 0 | A | G | 15.4% | 51.6 / 4.2 | 26 | Q278R (CAG→CGG) | PP_1775 | metallo‑beta‑lactamase family protein |
| Reads supporting (aligned to +/- strand): ref base A (11/11); new base G (2/2); total (13/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-02 | |||||||||||
CGACAAGGGCACCCTCCTGGTTCCTGCATTCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGATCCACTCGG > NC_002947/1982781‑1983044 | cGACAAGGGCACCCTCCTGGTTCCTGCATTAAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGcc < 1:138450/150‑1 (MQ=255) ccTGCATTCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTg < 1:17348/150‑1 (MQ=255) cTGCATTCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTGCCCCTTgg > 1:218193/1‑150 (MQ=255) ttCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAg > 1:509270/1‑150 (MQ=255) tCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAgc > 2:249708/1‑150 (MQ=255) caGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTAc < 2:212576/150‑1 (MQ=255) gttgtACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCAGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCg > 1:186709/1‑112 (MQ=255) gttgtACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCAGACGGTGAGCCAACCGACTGGTCACAGTTGCCCATCATCCTCGATTCg < 2:186709/112‑1 (MQ=255) tACGAGCTGGAAGACACACTGCATCCCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCAc < 2:144121/150‑1 (MQ=255) cGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGa < 2:255743/150‑1 (MQ=255) cTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTTCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAatat > 1:599910/1‑150 (MQ=255) cATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGc < 1:249708/150‑1 (MQ=255) aTTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAAGCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCa > 2:209353/1‑150 (MQ=255) cAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCCGCACGAATCTAAGAATGAAGACACCCGGgc > 2:35780/1‑150 (MQ=255) ctgAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgca < 1:328387/150‑1 (MQ=255) tgAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcag > 1:458119/1‑150 (MQ=255) aaCACTACCGGCCCGGCTCAGGAGGGTGATCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGTATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcagca < 2:509270/150‑1 (MQ=255) cggcccggcTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGa > 1:187155/1‑150 (MQ=255) tCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCGTCATCCTCGATTCGCCCTCGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGGGGGTTGCAGCAGGGCGCGATCCACTCgg > 1:276145/1‑150 (MQ=255) tCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGATCCACTCgg < 2:187155/150‑1 (MQ=255) cGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGAt > 2:77227/1‑140 (MQ=255) cGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGAt < 1:77227/140‑1 (MQ=255) aCTGGTCACGGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcagc > 2:428534/1‑112 (MQ=255) aCTGGTCACGGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcagc > 2:428587/1‑112 (MQ=255) aCTGGTCACGGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcagc < 1:428587/112‑1 (MQ=255) aCTGGTCACGGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTgcagc < 1:428534/112‑1 (MQ=255) | CGACAAGGGCACCCTCCTGGTTCCTGCATTCAGTCTTGGTCGCACGCAGGAGCTGTTGTACGAGCTGGAAGACATTCTGCACCGCAAAGCCCTGCTGAACACTACCGGCCCGGCTCCGGACGGTGAGCCAATCGACTGGTCACAGTTGCCCATCATCCTCGATTCGCCCTTGGCTCAGCGCATCACCCGCGTGTACCGGGAGCTGCACGAATATTGGAATGCAGAAGCCAGGGCGCGTGTTGCAGCAGGGCGCGATCCACTCGG > NC_002947/1982781‑1983044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |