Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,197,222 | G→A | 10.3% | A493V (GCG→GTG) | ethA ← | FAD‑containing monooxygenase EthA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,197,222 | 0 | G | A | 10.3% | 95.4 / 3.2 | 39 | A493V (GCG→GTG) | ethA | FAD‑containing monooxygenase EthA |
Reads supporting (aligned to +/- strand): ref base G (15/20); new base A (2/2); total (17/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01 |
GGCCGACGATGAGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAGGGTTCGCGCGGGCCCTGGCGCGGCATGCTGTC > NC_002947/3197077‑3197349 | ggCCGACGATGAGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGAAAGTATAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCAtt > 1:352170/1‑150 (MQ=255) ccGACGATGAGCAGGCAAGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCCCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTgg < 1:31820/150‑1 (MQ=255) gaTGAGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACt > 1:389823/1‑150 (MQ=255) aTGAGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTg < 1:284752/150‑1 (MQ=255) aGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCgg < 2:6859/150‑1 (MQ=255) gCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGt < 1:286777/150‑1 (MQ=255) gCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGt < 1:485463/150‑1 (MQ=255) cTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACtt < 2:224545/150‑1 (MQ=255) ccGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAg < 2:389823/150‑1 (MQ=255) gggCAGCTTGAGGGCTATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCa < 2:352170/150‑1 (MQ=255) atggccatggcTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCACATTGGGTACTGCGGTGAACTTCAGGCACTtgtctgtc > 2:304243/1‑150 (MQ=255) atggccatggcTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCACATTGGGTACTGCGGTGAACTTCAGGCACTtgtctgtc > 2:304192/1‑150 (MQ=255) gccatggcTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAAATGGACATCGGGGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCAcc > 2:11628/1‑150 (MQ=255) cTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGTCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCAc < 2:452750/150‑1 (MQ=255) gCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTACGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCgcagc > 1:179652/1‑150 (MQ=255) agagCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCTGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGcagcag > 1:40592/1‑150 (MQ=255) tGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGAc > 1:254270/1‑150 (MQ=255) tCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTcgc > 1:241782/1‑150 (MQ=255) cAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAaataa > 1:100898/1‑150 (MQ=255) aGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGttt > 1:589216/1‑133 (MQ=255) aGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGttt < 2:589216/133‑1 (MQ=255) aGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGa < 2:368806/150‑1 (MQ=255) gATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCACATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCAc < 1:304243/150‑1 (MQ=255) gATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCACATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCAc < 1:304192/150‑1 (MQ=255) ggTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAg < 2:241782/150‑1 (MQ=255) gTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCCGAAATAATCCCTCGACATCGCCCAgg > 2:35519/1‑150 (MQ=255) aTCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACtt < 1:496836/79‑1 (MQ=255) aTCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACtt > 2:496836/1‑79 (MQ=255) aTCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTtgt > 1:395672/1‑81 (MQ=255) aTCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTtgt < 2:395672/81‑1 (MQ=255) gctgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAg > 1:415501/1‑55 (MQ=255) gctgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAg < 2:415501/55‑1 (MQ=255) ctgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCgcag > 2:401590/1‑84 (MQ=255) ctgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCgcag < 1:401590/84‑1 (MQ=255) tgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAGGGTTCGCGCGGGCCCTGGCGCGGCATg < 2:274333/150‑1 (MQ=255) tgcAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGCCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAGGGTTCGCGCGGGCCCTGGCGCGGCATg < 2:68712/150‑1 (MQ=255) cTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATc < 2:473134/106‑1 (MQ=255) cTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATc > 1:473134/1‑106 (MQ=255) cTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAGGGTTCGCGCGGGCCCTGGCGCGGCATGCTGTc < 2:40592/150‑1 (MQ=255) | GGCCGACGATGAGCAGGACTGCCGGGGCGGCTTCATGGCCATGGCTGCGATAGCAGAGCCTGCGCTCGCCTGCCAGCTCGCAGAAGCGATCGGTGCTCATCGGCGGCTACCTTGCTGCTGCAACTGGACATCGGCGTGCAAGGGCGCATTGGGTACTGCGGTGAACTTCAGGCACTTGTCTGTCACCGCGCCACGGCGCAGCAGTTTGACGTCGCGGAAATAATCCATCGACATCACCCAGGGTTCGCGCGGGCCCTGGCGCGGCATGCTGTC > NC_002947/3197077‑3197349 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |