| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,489,710 | A→C | 20.2% | L575R (CTG→CGG) | clpV ← | protein ClpV1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,489,710 | 0 | A | C | 20.2% | 37.4 / 7.2 | 25 | L575R (CTG→CGG) | clpV | protein ClpV1 |
| Reads supporting (aligned to +/- strand): ref base A (10/10); new base C (2/3); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 | |||||||||||
TCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCC > NC_002947/3489561‑3489831 | tCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCTGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGACGTGGTCCTGCCCCAGCACGCGCTCACCAAACAGGGCCGGCa > 2:386013/1‑150 (MQ=255) ccGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGgcgc < 2:250251/150‑1 (MQ=255) gACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTg > 2:373494/1‑150 (MQ=255) cgccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGct < 2:588610/150‑2 (MQ=255) gccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCAc > 2:510791/1‑150 (MQ=255) ggCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGa < 1:541746/150‑1 (MQ=255) cGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCGCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGACCAGCACGCGCTCATCAAGCAGGGCCAGCAGGCGCTGCACGGTATCGAttt < 1:117489/150‑1 (MQ=255) gCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCGTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCtt > 1:66627/1‑150 (MQ=255) cTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTcc < 2:230323/150‑1 (MQ=255) ttCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCGTGCAGCGCCTGCCGGCCCTGcttggt > 2:530826/1‑100 (MQ=37) ttCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCGTGCAGCGCCTGCCGGCCCTGcttggt < 1:530826/105‑6 (MQ=37) aaTCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGc < 1:373494/150‑1 (MQ=255) gcTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGTTCGCCAAGCAGCGCCTGCCGGCCCTGcttg < 1:478468/74‑4 (MQ=25) gcTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttg > 2:478468/1‑71 (MQ=25) ttGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTg > 2:93543/1‑150 (MQ=255) gATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAACGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGAc > 1:32883/1‑150 (MQ=255) aTGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAgcgc > 1:249552/1‑150 (MQ=255) cAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTg < 1:386013/150‑1 (MQ=255) tCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCAGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGc > 2:140051/1‑150 (MQ=255) gCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTc < 2:125606/150‑1 (MQ=255) cAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGcc > 2:40120/1‑150 (MQ=255) cAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGCCACTGGTccac < 2:370517/150‑4 (MQ=255) aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATg < 2:337433/67‑1 (MQ=255) aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATg > 1:337433/1‑67 (MQ=255) aaGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGc < 1:79206/65‑1 (MQ=255) aaGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGc > 2:79206/1‑65 (MQ=255) | TCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCC > NC_002947/3489561‑3489831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |