Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,751,557 C→G 14.8% R790P (CGG→CCG)  PP_3316 ← chaperone‑associated ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,751,5570CG14.8% 67.3 / 6.3 27R790P (CGG→CCG) PP_3316chaperone‑associated ATPase
Reads supporting (aligned to +/- strand):  ref base C (12/11);  new base G (2/2);  total (14/13)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.14e-01

TTGCCCAGCGCATGGAAGACGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCGGCGTGGG  >  NC_002947/3751422‑3751695
                                                                                                                                       |                                                                                                                                          
ttGCCCAGCGCATGGAAGACGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATg                                                                                                                              >  1:370675/1‑150 (MQ=255)
               aaGACGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCAATTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACGACTGTCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGATTg                                                                                                               >  1:38461/1‑150 (MQ=255)
                 gACGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGa                                                                                                             <  2:370675/150‑1 (MQ=255)
                  aCGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGAc                                                                                                            <  2:297618/150‑1 (MQ=255)
                             aTCGAATCGGTTGAGGAACTCGAAGCGAAAGGGACCGCGCGGCACTCCCATCACCCGGCCCTTGGTCATCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCgatgat                                                                                                 >  2:573346/1‑150 (MQ=255)
                                    cGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGgtg                                                                                          <  2:318854/150‑1 (MQ=255)
                                                       gAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCAcgc                                                                       >  1:261078/1‑150 (MQ=255)
                                                                               tCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGcc                                               >  2:7762/1‑150 (MQ=255)
                                                                                          ttGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAac                                    <  1:7762/150‑1 (MQ=255)
                                                                                                  ctcGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGccc                                              <  1:282171/132‑1 (MQ=255)
                                                                                                  ctcGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGccc                                              >  2:282171/1‑132 (MQ=255)
                                                                                                         tcctcACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGAtg                     >  1:580684/1‑150 (MQ=255)
                                                                                                            tcACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGaa                                                                                  >  1:559996/1‑86 (MQ=255)
                                                                                                            tcACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGaa                                                                                  <  2:559996/86‑1 (MQ=255)
                                                                                                            tcACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGAtgttg                  >  1:131516/1‑150 (MQ=255)
                                                                                                                cAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTg                               >  2:521324/1‑133 (MQ=255)
                                                                                                                cAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTg                               <  1:521324/133‑1 (MQ=255)
                                                                                                                     gCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCg         <  2:131516/150‑1 (MQ=255)
                                                                                                                         cAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCGGCGt     <  2:261078/150‑1 (MQ=255)
                                                                                                                           ggCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCAGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCGGCGTgg   <  1:573346/150‑1 (MQ=255)
                                                                                                                            gcgcCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCGGCGTggg  >  2:381034/1‑150 (MQ=255)
                                                                                                                            cattattCAGCGGCGGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCgg        >  2:251020/6‑144 (MQ=255)
                                                                                                                            cattattCAGCGGCGGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCgg        <  1:251020/139‑1 (MQ=255)
                                                                                                                              gcCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGaa                                     >  2:319487/1‑113 (MQ=255)
                                                                                                                              gcCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGaa                                     <  1:319487/113‑1 (MQ=255)
                                                                                                                                attCAGCGGCGGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTa                >  1:567696/2‑132 (MQ=255)
                                                                                                                                attCAGCGGCGGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTa                <  2:567696/131‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                          
TTGCCCAGCGCATGGAAGACGATGATCTCATCGATTCGGTTGAGGAACTCGGGGCGAAAGTGCCCGCGCAGCACTTCCATCACCTCGACCTTGGTCTTCTCGTACTCCTCACCAGCCGCTCCAGGCGCCTTCAGCCGCCGCTGAATAATGTCGGAGCCCAGGTTGGACGTGGCGATGATAATGGTGTTGGTGAAGTCCACCACGCGCCCCTTGCCATCGGTCAGTCGCCCGTCGTCGAACACCTGCAGCAGGATGTTGTAGACGTCGGCGTGGG  >  NC_002947/3751422‑3751695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: