| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,813,033 | G→A | 26.7% | A23T (GCC→ACC) | PP_3369 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,813,033 | 0 | G | A | 26.7% | 18.4 / 5.0 | 15 | A23T (GCC→ACC) | PP_3369 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (6/5); new base A (2/2); total (8/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCGGGCATTGAAGCCGGCATGGTCATAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGAT > NC_002947/3812892‑3813181 | aGGCGGGCATTGAAGCCGGCATGGTCATAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGAcc > 2:529916/1‑150 (MQ=255) gggCATTGAATCCGGCATGGTCATAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTgg < 2:569604/150‑1 (MQ=255) ccGGCATGGTCATAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCAc > 1:225736/1‑150 (MQ=255) tAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGcc > 2:178736/1‑150 (MQ=255) cccTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCAtcgcttcgc > 2:128207/1‑150 (MQ=255) cGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTACCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCttga > 2:492905/1‑147 (MQ=255) cGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTACCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCttga > 2:492923/1‑147 (MQ=255) cGAGTCATTCATGGTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGCCCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCaa < 1:178736/150‑1 (MQ=255) tcattcatGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTACCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCttgagctg < 1:492923/150‑8 (MQ=255) tcattcatGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTACCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTTGAGCTg < 1:492905/150‑1 (MQ=255) ttcatGTTCGGTTGGGAAGACCTGCGCCATTTCTCCGCCGTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTc < 2:420541/150‑1 (MQ=255) aTTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTc < 1:529916/150‑1 (MQ=255) cgcCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGcc < 2:601536/150‑1 (MQ=255) aTTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGCACGACGTCCCCGCGCTTATGCCCTcc > 2:192125/1‑149 (MQ=255) cTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAgg > 2:203306/1‑150 (MQ=255) tgcCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGAt < 1:128207/150‑1 (MQ=255) | AGGCGGGCATTGAAGCCGGCATGGTCATAAAGGGTTACCCTACCCCTTTATGCACCCGCCACTGCCGAGTCATTCATGTTCGATTGGGAAGACCTGCGCCATTTCTCCGCCTTCAGCTCGGCCGGCTCGCTGTCGGCTGCTGCCAAGACCCTGGGTGTCGACCACGCCACCGTGGCCCGGCGCATCGCTTCGCTCGAGGCTTCGCTCCAGCTCAAGCTGGTCGACCGACGTCCCCGCGCTTATGCCCTCACCCACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGAT > NC_002947/3812892‑3813181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |