Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,908,447 | C→T | 11.8% | L118L (CTG→TTG) | PP_3450 → | TPR repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,908,447 | 0 | C | T | 11.8% | 84.4 / 3.6 | 34 | L118L (CTG→TTG) | PP_3450 | TPR repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (14/16); new base T (2/2); total (16/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.05e-01 |
GCAGCCGCTGGCCGACACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCG > NC_002947/3908305‑3908590 | gCAGCCGCTGGCCGACACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCtggccat < 2:513137/150‑1 (MQ=255) gCTGGCCGACACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCaa < 2:575575/150‑1 (MQ=255) acacAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGGCGCGGTTGGCCATGGCCAGCcgcgtct < 2:280191/150‑4 (MQ=255) ttGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGc > 1:52074/1‑150 (MQ=255) tgccCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGACCAACCGCGCCATTGCCGTCGGccacca > 2:408610/1‑150 (MQ=255) aCTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCGGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAgg < 2:183918/150‑1 (MQ=255) cAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCaa < 1:193332/150‑1 (MQ=255) gcatGGCCAACACCTAGATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACcct > 2:500292/4‑150 (MQ=255) cAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCTCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGccaccac > 1:420132/1‑127 (MQ=255) cAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGccaccac < 2:420132/127‑1 (MQ=255) cTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTTGCCAGGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCt > 1:434248/1‑150 (MQ=255) cTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctgg < 1:376036/139‑1 (MQ=255) cTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACgctgg > 2:376036/1‑139 (MQ=255) cAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCt > 2:371363/1‑150 (MQ=255) gCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTg > 1:519151/1‑149 (MQ=255) gCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTg < 2:519151/149‑1 (MQ=255) tCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACG‑CCCCTCCCCCGCAGCGGCCAACCAGACGCGGTtggccatggccagc < 1:356837/82‑3 (MQ=255) tCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACG‑CCCCTCCCCCGCAGCGGCCAACCAGACGCGGTtggccatggccagc > 2:356837/1‑80 (MQ=255) tGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGagc > 1:479815/1‑150 (MQ=255) tGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAgcg > 1:36096/1‑150 (MQ=255) ctgGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGc < 1:4360/115‑1 (MQ=255) ctgGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGc > 2:4360/1‑115 (MQ=255) ctgGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCaa < 1:336514/150‑1 (MQ=255) tgGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAAc < 1:178160/150‑1 (MQ=255) gCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACtt < 2:36096/150‑1 (MQ=255) cccACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACttt < 1:371363/150‑1 (MQ=255) ccccTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACt > 1:121044/1‑150 (MQ=255) cccTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTg < 2:15317/150‑1 (MQ=255) gCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGc < 1:227089/150‑1 (MQ=255) gACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTg > 2:311586/1‑120 (MQ=255) gACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTg < 1:311586/120‑1 (MQ=255) gcgcgGTTGGCCATGGCCAGCCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAgcg > 2:115165/2‑150 (MQ=255) ggCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgc > 2:329518/1‑87 (MQ=255) ggCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTgc < 1:329518/87‑1 (MQ=255) | GCAGCCGCTGGCCGACACAGGCCAGTTGCCTGCCCAGGACTGGCAACGCCTGGCCAATGCCTATATCCAGCAAGTCGACGAAAAGGGCCTGACTGCGCTGCTGGCCCACGCCCCCTCCCCCGCAGCGGCCAACCAGACGCGGCTGGCCATGGCCAACCGCGCCATTGCCGTCGGCCACCACCAGCAGGCCCAACGCTGGCTGCAGTCGCTACCGCCTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCG > NC_002947/3908305‑3908590 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |