| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,294,011 | C→G | 17.9% | D13H (GAC→CAC) | PP_3763 ← | precorrin‑6A synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,294,011 | 0 | C | G | 17.9% | 57.9 / 8.3 | 28 | D13H (GAC→CAC) | PP_3763 | precorrin‑6A synthase |
| Reads supporting (aligned to +/- strand): ref base C (9/14); new base G (3/2); total (12/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.36e-01 | |||||||||||
CAGGCGATAACCACCCTCGGGGCGGTAGCGCTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTAGAAGATCGAGAAGTTGTAGCTGACAATGACCCGC > NC_002947/4293862‑4294151 | cAGGCGATAACCACCCTCGGGGCGGTAGCGCTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTc > 1:161954/1‑150 (MQ=255) aGGCGATAACCACCCTCGGGGCGGTAGCGCTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCa < 2:37624/150‑1 (MQ=255) gATAACCACCCTCGGGGCGGTAGCGCTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCAccta < 2:304655/150‑3 (MQ=255) gcTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGt > 2:475409/1‑150 (MQ=255) aGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTc < 2:161954/150‑1 (MQ=255) ttGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCTCGGGTCACCCGCGCCGATACCGATCAACAACAg > 2:225848/1‑134 (MQ=255) ttGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAg < 1:225848/134‑1 (MQ=255) gcAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCAtt > 1:261083/1‑140 (MQ=255) gcAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCAtt < 2:261083/140‑1 (MQ=255) gcAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTgccctgccct > 2:94178/1‑150 (MQ=255) gcACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTGACCCGCGccag < 2:422431/108‑3 (MQ=255) gcACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTGACCCGCGccag > 1:422431/1‑106 (MQ=255) cATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGc > 2:431852/1‑139 (MQ=255) cATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGc < 1:431852/139‑1 (MQ=255) tGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGGACCCGCGACCAtt < 1:59310/150‑1 (MQ=255) gAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCgg < 2:432218/150‑1 (MQ=255) cGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTAttt > 1:579752/1‑150 (MQ=255) gaagaaCACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATtgccct > 2:349056/1‑102 (MQ=255) gaagaaCACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATtgccct < 1:349056/102‑1 (MQ=255) tGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTc > 2:77969/1‑83 (MQ=255) tGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTc < 1:77969/83‑1 (MQ=255) cTGGGCAGGGCAGCGACCGCTTGATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTa < 2:40091/150‑1 (MQ=255) tGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTag < 1:94178/150‑1 (MQ=255) aTCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTagaaga < 1:117243/144‑1 (MQ=255) aTCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTagaaga > 2:117243/1‑144 (MQ=255) gCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTAGAAGATCGAGAAGTTGTa < 1:475409/150‑1 (MQ=255) ggCGCGGGTGACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTAGAAGATCGAGAAGTTGTAGCTGACAATGACCcgc > 2:365580/1‑150 (MQ=255) gcgcGGGTGACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAAccc > 2:188976/1‑68 (MQ=255) gcgcGGGTGACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAAccc < 1:188976/68‑1 (MQ=255) | CAGGCGATAACCACCCTCGGGGCGGTAGCGCTGCAGAATGGCCTTGCGCAGGCGCACCAGTTCATCTTTGTCGTCGCCCTTGTCGAGCACGAAGAACACGCTGGCACTGCGCAGCGCATCGACCGCTTCATAGGTGACCTGGCGCGGGTCACCCGCGCCGATACCGATCAACAACAGGTCTTTCATTGCCCTGCCCTTTGCGGGAACCCGCGACCATTGTCGGGCGGTTACCGGTATTTGGCAAAGCAGCTGCTTAGAAGATCGAGAAGTTGTAGCTGACAATGACCCGC > NC_002947/4293862‑4294151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |