Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,520,508 | A→G | 27.3% | intergenic (+55/+17) | cspD → / ← icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,520,508 | 0 | A | G | 27.3% | 26.3 / 10.7 | 22 | intergenic (+55/+17) | cspD/icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (8/8); new base G (3/3); total (11/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-01 |
TCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATG > NC_002947/4520377‑4520648 | tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑tt > 1:270571/1‑150 (MQ=255) aTGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACAtgt < 1:99524/150‑1 (MQ=255) cAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCTCCAAAGCCTGa < 2:305411/150‑1 (MQ=255) cAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGa < 2:270571/150‑1 (MQ=255) cTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGa > 1:172084/1‑92 (MQ=255) cTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGa < 2:172084/92‑1 (MQ=255) cTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAgctgct < 2:399370/150‑1 (MQ=255) gCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgc > 1:119250/1‑150 (MQ=255) cTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGaa < 2:145935/150‑1 (MQ=255) aCTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTTCACACGCAG‑GAGC‑TTCTGAGCCAGCCGTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATc < 1:380690/150‑1 (MQ=255) cggtcGCTTCTTT‑TAAAGAAGCGGCCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGcc < 2:473028/133‑1 (MQ=255) cGGTCGCTTCTTT‑TAAAGAAGCGGCCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGcc > 1:473028/1‑137 (MQ=255) ggtcGCTTCTTT‑TAAAGAAGCGGCCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg > 1:372116/4‑134 (MQ=255) ggtcGCTTCTTT‑TAAAGAAGCGGCCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg < 2:372116/131‑1 (MQ=255) gtcGCTTCTTT‑TAAAGAAGCGGCCGATTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTg > 2:539976/3‑150 (MQ=255) gCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGGTGCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTg > 1:469525/1‑150 (MQ=255) ccGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAc > 2:146859/1‑82 (MQ=255) ccGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAc < 1:146859/82‑1 (MQ=255) ttt‑AAAAGTAGCGACCGGTTTTCTGTTGAC‑TTACATGTGTTTGATAATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTTTATCAATCGCTCGAAATCGTAGGTCACGGTCTTGACCGCAATGGCGCCATTGGTGCCGtt > 2:217535/1‑150 (MQ=255) ttt‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCtt > 1:344365/1‑150 (MQ=255) ttaaaGAAGCGGCCGATTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtga < 1:539976/148‑1 (MQ=255) aaaGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtgatg > 2:173932/1‑150 (MQ=255) gACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGt > 1:495369/1‑108 (MQ=255) gACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGt < 2:495369/108‑1 (MQ=255) | TCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAAAAAAATCGGCCGCTTCTTT‑AAAAGAAGCGACCGGTTTTCTGTTGCC‑TTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATG > NC_002947/4520377‑4520648 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |