| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,895,519 | G→A | 15.2% | intergenic (‑75/‑72) | PP_4303 ← / → PP_4304 | hypothetical protein/VIC family cation transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,895,519 | 0 | G | A | 15.2% | 72.6 / 6.6 | 33 | intergenic (‑75/‑72) | PP_4303/PP_4304 | hypothetical protein/VIC family cation transporter |
| Reads supporting (aligned to +/- strand): ref base G (13/15); new base A (2/3); total (15/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.63e-01 | |||||||||||
TTCTGCAAAAAGCCGTAAGCGTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGTCTTCCAGACCGACACCGTAGCCGGTCGCCGCTTC > NC_002947/4895371‑4895668 | ttCTGCAAAAAGCCGTAAGCGTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGc < 1:4158/150‑1 (MQ=255) cAAAAAGCCGTAAGCGTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTACCAGtt > 1:387548/1‑150 (MQ=255) aaGCCGTAAGCGTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGc < 2:432954/150‑1 (MQ=255) gTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGt < 1:507319/150‑1 (MQ=255) tgtTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGAc < 2:469836/150‑1 (MQ=255) aGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTc > 2:559275/1‑115 (MQ=255) aGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTc < 1:559275/115‑1 (MQ=255) ccAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGAc > 1:402353/1‑139 (MQ=255) ccAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGAc < 2:402353/139‑1 (MQ=255) ttACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTACCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGa > 1:73896/1‑150 (MQ=255) cccTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATca > 2:553901/1‑150 (MQ=255) tCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGAGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGcc > 2:447408/1‑150 (MQ=255) tCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGAGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGcc > 2:447397/1‑150 (MQ=255) aTGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGAc > 2:391079/1‑110 (MQ=255) aTGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGAc < 1:391079/110‑1 (MQ=255) tGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATg > 2:602572/1‑150 (MQ=255) tcACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAAcccc < 1:553901/150‑1 (MQ=255) acacacTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACGTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGc > 1:596296/1‑150 (MQ=255) acacacTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGc > 1:332602/1‑150 (MQ=255) acacTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGcaa > 1:43461/1‑150 (MQ=255) acacTTGCCCGCGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAACAGTCGAGCTCAAGCGCATTT‑TGCCGGTTCCAGGTCCGCACACCGACATTTTAGGCTTGTTGCTTATGCACCTGGATCACAAGCCATGCAAACCCCGcaa < 1:447397/150‑1 (MQ=255) acacTTCCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAACCTGAC‑TTCAGACGTGTGCTCTTCTGTTGCAGGTCCGTACGCTGCCCTTTTAGGCTTGTTCCTGACGCAGCCGGATCACAAGCCATGCAAACCCCGcaa < 1:447408/150‑1 (MQ=255) cacTTGCCCGTGCCTTACGCTATTCTGCGCCCACCACTCAGATACCTAAACCTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGcaat < 2:320118/150‑1 (MQ=255) ttGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTACCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGcaatcaa < 2:387548/150‑1 (MQ=255) gCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGATCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATCAGCCAGCGGcctt > 2:438401/1‑147 (MQ=255) gCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGctct < 2:261501/150‑1 (MQ=255) tATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTc < 2:43461/150‑1 (MQ=255) tATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTACCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTc < 2:73896/150‑1 (MQ=255) ttCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGt > 1:300921/1‑150 (MQ=255) gcgcCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTAATc < 2:332602/150‑1 (MQ=255) gcCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGt > 1:418030/1‑150 (MQ=255) cTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGTCTTCCAGACCGACACCGTAGCCg < 1:602572/150‑1 (MQ=255) tGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGTCTTCCAGACCGACACCGTAGCCGGTCGCCGCtt < 2:300921/150‑1 (MQ=255) gCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGTCTTCCAGACCGACACCGTAGCCGGTCGCCGCTTc < 1:364313/150‑1 (MQ=255) | TTCTGCAAAAAGCCGTAAGCGTTATATGACAGTGTTCGCCGAGCCAAGCCCCGTCGTTCAGTTACCCTTTTCATGACTGTCTCACACACTTGCCCGTGCCTGACGCTATTCTGCGCCCACCACTCAGATACCTAAAACTGGCATTTTTGCCAGTTC‑AGCCTGTTGCAGGTCCGGACACTGACCTTTTAGGCTTGTTGCTTACGCACCCGGATCACAAGCCATGCAAACCCCGCAATCAATACGCGAGCGGCTCTTCGTCATCGTCTTCCAGACCGACACCGTAGCCGGTCGCCGCTTC > NC_002947/4895371‑4895668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |