Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,076,041 | A→G | 8.7% | V183A (GTC→GCC) | phnN ← | ribose 1,5‑bisphosphate phosphokinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,076,041 | 0 | A | G | 8.7% | 124.8 / 2.9 | 46 | V183A (GTC→GCC) | phnN | ribose 1,5‑bisphosphate phosphokinase |
Reads supporting (aligned to +/- strand): ref base A (22/20); new base G (2/2); total (24/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.97e-01 |
CGCTGCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAGCAAGCGCTGGCGCAGCACCTCA > NC_002947/5075897‑5076187 | cgcTGCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGAccgcc > 1:162279/1‑150 (MQ=255) gcTGCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTATTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGAccgccg > 1:268012/1‑150 (MQ=255) tGCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATTCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCgccgcc > 2:423346/1‑150 (MQ=255) gCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCt > 1:594883/1‑150 (MQ=255) caGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGGTcgccgcatt < 2:371861/148‑4 (MQ=255) caGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGGTcgccgcatt > 1:371861/1‑145 (MQ=255) tGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATTCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGgaa < 1:423346/150‑1 (MQ=255) aTGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAgtgt < 1:158449/138‑1 (MQ=255) aTGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAgtgt > 2:158449/1‑138 (MQ=255) cTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGCAACTAATGCGGCGACCGCCGCCTCCAgtgt < 1:267632/123‑1 (MQ=255) cTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAgtgt > 2:267632/1‑123 (MQ=255) gTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGt > 2:146155/1‑150 (MQ=255) aTGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGc > 1:450958/1‑150 (MQ=255) tGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCa < 2:450958/150‑1 (MQ=255) cTGAACTGCGCTTCTGCGCGTAAGCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGAGAACCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCt < 1:39050/150‑1 (MQ=255) tGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCtt > 2:514995/1‑150 (MQ=255) tGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGt < 2:561859/133‑1 (MQ=255) tGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGt > 1:561859/1‑133 (MQ=255) gCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGt < 2:162279/150‑1 (MQ=255) tAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGgaagaa < 2:484602/94‑1 (MQ=255) tAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGgaagaa > 1:484602/1‑94 (MQ=255) aaTCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGcc > 2:330403/1‑150 (MQ=255) cTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGgc > 1:491673/1‑150 (MQ=255) ttttCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGTTCCCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGgcg < 1:340663/150‑1 (MQ=255) ttttCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGGTcgccgcatt < 2:365828/75‑4 (MQ=255) ttttCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGGTcgccgcatt > 1:365828/1‑72 (MQ=255) ttttCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGACCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGgcg < 1:340707/150‑1 (MQ=255) cTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGt < 1:330403/150‑1 (MQ=255) gctATCCCCGCGATAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATAAACCGACGGGTCGGCTGCAGCGTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCActt > 1:256445/1‑150 (MQ=255) ccccGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTtcttct < 1:514995/150‑1 (MQ=255) cccGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTg > 1:524930/1‑150 (MQ=255) cccGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGATTGCAAGCATGCGCTGCGCGACGGGCTTTGGTCCACGTCTTCTg > 2:133913/1‑150 (MQ=255) ccGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCa > 2:297459/1‑77 (MQ=255) ccGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCa < 1:297459/77‑1 (MQ=255) cgcgGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTgcg > 1:2671/1‑150 (MQ=255) gtaCGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTccc < 2:268012/150‑1 (MQ=255) gtaCGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTccc < 1:146155/150‑1 (MQ=255) cGCCATGGTCGCGAAGCAGCGAAGCGAATGGCGCGACCGGCGCCTTCAGTGTGGAAGACTTATCCAGCACATGCACCGACGGGTCGGCTCCAGCTTGCAAGCCTGCGCTGCGCCCGGGGCGCTGTTCCACTTCTTCGGCGCTTTCCCGcc < 2:186263/150‑1 (MQ=255) gcgAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGGCGGGTCGGCTGCAGCTTGCAAGCGTACGCTACGCGCGACGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAg > 2:479254/1‑150 (MQ=255) gAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGACTGCAGCTTGCAAGCGTGCGCTGCGCGCCa < 2:431977/97‑1 (MQ=255) gAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGACTGCAGCTTGCAAGCGTGCGCTGCGCGCCa > 1:431977/1‑97 (MQ=255) aCGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAGCAAGCGCTGgcgc > 2:183574/1‑150 (MQ=255) cGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCATGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAGCAAGCGCTGGCgca < 2:594883/150‑1 (MQ=255) gAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCggg < 2:601678/131‑1 (MQ=255) gAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCggg > 1:601678/1‑131 (MQ=255) gcgACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAGCAAGCGCTGGCGCAGCACCTCa < 2:491673/150‑1 (MQ=255) | CGCTGCACAGCGGGATGGCCAGCATGTTAACCAGCATGCTGGCGTTTGTCATGCCTGAACTGGGCTTTTTCGCGTAATCCTTTTCTGCGCTGCTATCCCCGCGGTAGTACGCCCTGATCGCGAAGCAGCGAAACGAATGCGGCGACCGCCGCCTCCAGTGTGGAAGAATTATCCAGCACATGCACCGACGGGTCGGCTGCAGCTTGCAAGCGTGCGCTGCGCGCCAGGCGCTGTTCCACTTCTTCTGCGCTTTCCCGCCCCCGGGCCAGCAAGCGCTGGCGCAGCACCTCA > NC_002947/5075897‑5076187 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |