Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,027,278 | A→T | 12.9% | F212Y (TTC→TAC) ‡ | PP_5277 ← | MFS transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,027,278 | 0 | A | T | 12.9% | 81.0 / 4.9 | 31 | F212Y (TTC→TAC) ‡ | PP_5277 | MFS transporter |
Reads supporting (aligned to +/- strand): ref base A (10/17); new base T (2/2); total (12/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.30e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
CATATGGTCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAGCGGCGCGGCCAGCAGCAGGCCG > NC_002947/6027136‑6027424 | cATATGGTCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGGCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGc < 2:239695/150‑1 (MQ=255) tGGTCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTAAATTCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAAc > 1:500566/1‑150 (MQ=255) gTCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGTTCGAGGCGatgat < 2:462248/150‑5 (MQ=255) tCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAgg < 1:388388/150‑1 (MQ=255) cAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAAt > 1:252598/1‑150 (MQ=255) tGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGAGCAATGGCCCAGGCaa < 2:209825/150‑1 (MQ=255) aTTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGAACATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCg < 1:418360/150‑1 (MQ=255) ttGCAGGACCGCATCAGCCACCACCACGGTACTCACCATGAACCAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCgg < 2:224985/150‑1 (MQ=255) ttGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCgg < 1:393771/150‑1 (MQ=255) cagcaCCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCaa < 2:112789/150‑1 (MQ=255) aCCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCa < 2:395223/131‑1 (MQ=255) aCCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCa > 1:395223/1‑131 (MQ=255) caccaccacGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGc > 1:249791/1‑150 (MQ=255) ggTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTc < 1:512046/150‑1 (MQ=255) tCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCaa > 2:337765/1‑150 (MQ=255) aCCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAAc > 2:211838/1‑90 (MQ=255) aCCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAAc < 1:211838/90‑1 (MQ=255) cATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGt > 1:503567/1‑150 (MQ=255) cAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACt < 1:10205/150‑1 (MQ=255) tgctgcAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCCGGCGATTACCGGCAAGCGTCGGCAGA‑AGGCGAACATGGCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTcca > 1:599466/1‑150 (MQ=255) gctgcAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTccac < 1:337765/150‑1 (MQ=255) cGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAAc < 2:252598/150‑1 (MQ=255) ggCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAAcc < 2:500566/150‑1 (MQ=255) ggTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAg < 2:165555/144‑1 (MQ=255) ggTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAg > 1:165555/1‑144 (MQ=255) gAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAgcggcgcggc < 2:249791/150‑1 (MQ=255) aatcatcGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTGGGCGCTCCACCACGCCCCAGCAGAACCAGCGGCGCGGCcag > 2:421876/2‑150 (MQ=255) tgttcGCCTCGTTCGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGgcgc < 2:219196/109‑1 (MQ=255) tgttcGCCTCGTTCGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGgcgc > 1:219196/4‑112 (MQ=255) ttcGCCTCGTTCGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAGCGGCGCGGCcagcagc > 2:440209/2‑150 (MQ=255) tCGAACGATGTGAACACGGCAATGGCCCAGGCAATTCCCGGCAAGCGTCCGAAGATCTGTAGGCCGCTC‑CTAAAGGTCACATTGCAGTCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAGCGGCGCGGCCAGCAGCAGGCCg < 1:43961/150‑1 (MQ=255) | CATATGGTCGGCCAGCGCGCCGATGGGCAATTGCAGCACCGCATCACCCACCACCACGGTACTCACCATGAACAAGGCGATTTCGGTGCTGAAGCCCTGCTGCAGGCAATACACCGGCAGCAAGGTGAGGATCATCGCCTCGAACGAGGCGAACAGGGCAATGGCCCAGGCAATTACCGGCAAGCGTCGGCAGA‑AGGCGAACAGGTCGCCAAAGGTGACACTGCAGGCTTCCGTGCTCGGCGCTCCACCACGCCCCAGCAGAACCAGCGGCGCGGCCAGCAGCAGGCCG > NC_002947/6027136‑6027424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |