| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 699,398 | A→G | 25.0% | intergenic (+50/‑36) | PP_16SD → / → PP_t05 | 16S ribosomal RNA/tRNA‑Ile |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,398 | 0 | A | G | 25.0% | 23.3 / 4.9 | 16 | intergenic (+50/‑36) | PP_16SD/PP_t05 | 16S ribosomal RNA/tRNA‑Ile |
| Reads supporting (aligned to +/- strand): ref base A (5/7); new base G (2/2); total (7/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCAAATCTGCCCAGACCTACCATTACATGGTTCAGCCGTAGAATACGG > NC_002947/699293‑699536 | gggTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTa > 2:316254/1‑150 (MQ=32) cGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTg < 1:123687/150‑1 (MQ=32) tAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGt < 1:316254/150‑1 (MQ=32) aaGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTACCGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTaga > 1:54963/1‑150 (MQ=17) cGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCAccc > 1:317635/1‑150 (MQ=32) aaCCTGCGGCTGGATCACCTCCTTAATCGGCAACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAg < 2:266440/150‑1 (MQ=17) ctcctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCa > 2:576731/1‑150 (MQ=32) cctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCaaa < 1:148721/150‑1 (MQ=32) cctTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCATGCTAAGGGTGAGGTCGGCAGTTCaaa < 2:317635/150‑1 (MQ=17) acgacATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCAAATCTGCCCAg < 2:430563/150‑1 (MQ=32) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCGTTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCACAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCAAATCTGCCCAGACCTACCAtt > 1:38878/1‑150 (MQ=17) ccTGCTGATGAGCTCCCACACGAATTGCTTGATTCGTTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGACTGTTGAACTGTTGGTTAGAGCGCACCCCTGATACGGGTGAGGTCGGCAGTTCCAATCTGACCAGAGCTACCAtt > 1:38872/1‑150 (MQ=11) tgatgaGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAg < 1:538254/112‑1 (MQ=32) tgatgaGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAg > 2:538254/1‑112 (MQ=33) ttGCTTGATTCGTTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCAAATCTGCCCAGACCTACCATTACATGGTTCAGCCGTAGAATACgg < 2:38878/150‑1 (MQ=17) tgtcTTGAGTCGTTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGATCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGTTCGGCAGTTCAAATCTGACCAGACCTACCCTTAAATGGTTCAGCCGTAGAATACgg < 2:38872/147‑1 (MQ=11) | GGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTAATCGACGACATCAGCCTGCTGATGAGCTCCCACACGAATTGCTTGATTCATTGTAAAAGACGATGCTGTAACGCTACCCTGTTATAGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGCAGTTCAAATCTGCCCAGACCTACCATTACATGGTTCAGCCGTAGAATACGG > NC_002947/699293‑699536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |