New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	681274 =	45 (0.910)	13 (0.310)	9/224	3.5	28.6%	intergenic (+11/+58)	PP_0583/PP_0584	AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer
	?	NC_002947	681322 =	27 (0.650)					intergenic (+59/+10)	PP_0583/PP_0584	AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer
Rejected: Coverage evenness skew score above cutoff.

GGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGG  >  NC_002947/681146‑681423                                                                                                                                 |                                                                                                                                                      ggAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg                                                                                                                                  <  2:845857/150‑1 (MQ=255)  gAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgggg                                                                                                                                 >  2:1096400/1‑150 (MQ=255)  gAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgggg                                                                                                                                 <  2:1002432/150‑1 (MQ=255)      cGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGAAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTAt                                                                                                                             <  1:1096400/150‑1 (MQ=255)              aaTGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGaaa                                                                                                                     <  2:1111734/150‑1 (MQ=255)              aaTGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGaaa                                                                                                                     <  2:1193277/150‑1 (MQ=255)                tgtgACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgggg                                                                                                                                 <  1:328816/136‑1 (MQ=255)                tgtgACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgggg                                                                                                                                 >  2:328816/1‑136 (MQ=255)                tgtgACCGAGGCGGCGCTGGGGTGTGGGTATGACCCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCt                                                                                                                                                     <  2:42438/116‑1 (MQ=255)                tgtgACCGAGGCGGCGCTGGGGTGTGGGTATGACCCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCt                                                                                                                                                     >  1:42438/1‑116 (MQ=255)                  tgACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGc                                                                                                                 <  2:39249/150‑1 (MQ=255)                   gACCGGGGCGGCGCTGGGGTGTGGGGATGGCTGCTCCTGGGGTTACATGGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTGTGGTTTTGGGTTTCCTGTGCTGGCCCTTTCGCGGGGTTATCCGCGAAAGGGcc                                                                                                                <  2:1248777/150‑1 (MQ=255)                   gACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGcc                                                                                                                >  2:189674/1‑150 (MQ=255)                        aGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGcac                                                                                                           >  1:544973/1‑150 (MQ=255)                          gcggcgCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCAGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAg                                                                                                         <  2:907284/150‑1 (MQ=255)                               gcTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCAt                                                                                                    >  2:706322/1‑150 (MQ=255)                               gcTGGGGTGTGGGTATGACTCCACCGGGGCTTACATTGCGGCATTCAAGCAGCTATTTGGGGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCAt                                                                                                    <  2:72170/150‑1 (MQ=255)                                   gggTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGcat                                                                                                <  2:241708/150‑1 (MQ=255)                                           gTATGACTCCACGTCGGCCTACATGGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCATTTCGCCGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGt                                                                                        <  2:122650/150‑1 (MQ=255)                                                  tCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg                                                                                                                                  <  1:695432/101‑1 (MQ=255)                                                  tCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg                                                                                                                                  >  2:695432/1‑101 (MQ=255)                                                    cACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgg                                                                                                                                   >  2:1150037/1‑98 (MQ=255)                                                    cACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCgg                                                                                                                                   <  1:1150037/98‑1 (MQ=255)                                                            ccTACATTGGGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCa                                                                       <  1:189674/150‑1 (MQ=255)                                                            ccTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCa                                                                       <  2:1082198/150‑1 (MQ=255)                                                                     cGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCa                                                              <  2:544973/150‑1 (MQ=255)                                                                         aTTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCg                                                                                                                                               >  1:1006083/1‑65 (MQ=255)                                                                         aTTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCg                                                                                                                                               <  2:1006083/65‑1 (MQ=255)                                                                             aaGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCg                                                                                                                                               >  1:600882/1‑61 (MQ=255)                                                                             aaGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCg                                                                                                                                               <  2:600882/61‑1 (MQ=255)                                                                             aaGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTg                                                      <  1:792278/150‑1 (MQ=255)                                                                               gcagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg                                                                                                                                  <  2:201588/72‑1 (MQ=255)                                                                               gcagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg                                                                                                                                  >  1:201588/1‑72 (MQ=255)                                                                                cagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATcc                                                                                                                           >  1:690940/1‑78 (MQ=255)                                                                                cagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATcc                                                                                                                           <  2:690940/78‑1 (MQ=255)                                                                                     aTTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCTGGCAGAGGCGATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTGTCCAGCCCATTGGACAGccc                                              >  1:918181/1‑150 (MQ=255)                                                                                        tGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGc                                           >  2:965359/1‑150 (MQ=255)                                                                                                 acCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGa                                                    >  1:274607/1‑132 (MQ=255)                                                                                                 acCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGa                                                    <  2:274607/132‑1 (MQ=255)                                                                                                                 ctctGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCatcatc                                                                                            <  2:701797/76‑1 (MQ=255)                                                                                                                 ctctGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCatcatc                                                                                            >  1:701797/1‑76 (MQ=255)                                                                                                                  tctGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGcgccg                 >  1:435165/1‑150 (MQ=255)                                                                                                                        tttCGGTTTCCTGTGCCGCCCCGTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGGGCGGAACCTGCGCACCAGCGTATGCAGCTCATTTGACAGCCCGTCCAGGCTCTCTTAGTCCTGGCGCGTCGCCTtgg           >  2:1204341/1‑150 (MQ=255)                                                                                                                              tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCa                                                         <  1:204221/98‑1 (MQ=255)                                                                                                                              tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCa                                                         >  2:204221/1‑98 (MQ=255)                                                                                                                                 ccTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCgg  >  1:243246/1‑150 (MQ=255)                                                                                                                                 |                                                                                                                                                      GGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGG  >  NC_002947/681146‑681423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.