New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522745 =	19 (0.820)	8 (0.390)	4/224	NT	29.8%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522832 =	21 (1.020)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase

AAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3522902‑3522745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAA  >  NC_002947/3522832‑3522980                                                                                                                                                                                                                                                                                                                     AAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGG                                                                                                                                                               >  1:492176/1‑150   GCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGC                                                                                                                                                             <  1:130441/150‑1                                                                          CCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCA                                                                                              >  1:451965/1‑141                                                                          CCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCA                                                                                              <  2:451965/141‑1                                                                                CCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGC                                                                                                                     >  1:611182/1‑113                                                                                CCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGC                                                                                                                     <  2:611182/113‑1                                                                                     GCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAA                                                                                      >  1:94489/1‑139                                                                                     GCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAA                                                                                      <  2:94489/139‑1                                                                                             ATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAC                                                                                                  <  1:299326/118‑1                                                                                             ATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAC                                                                                                  >  2:299326/1‑118                                                                                                                                                             GCATGCTCCAGCAGGCGCATCAGGCCTAGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCGCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCACCCCGACGCCAAAaaagaa   >  2:460497/1‑144                                                                                                                                                              CATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAA  >  1:218775/1‑150                                                                                                                                                                                                                                                                                                                     AAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3522902‑3522745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAA  >  NC_002947/3522832‑3522980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.