New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4110307 =	29 (1.240)	4 (0.180)	4/244	NT	14.9%	coding (2085/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110336 =	18 (0.800)					coding (2114/2991 nt)	PP_3616	membrane protein

AAACCCAGCGCAATCGCCGGGTATCCGGCTAAACGCGCAAACAGATTGCTACTCAAAAACTTGATAACCCCATTGCCAAAG‑GCCATGCCCGGCGCTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4110408‑4110307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaATGGGGTTATCAAGTTTTTGAGTAGCAATCTGTTTGCGCGTTTAGCCGGATACCCGGCGATTGCGCTGGGTTTTTTCGCGGACGGTACTAAGGCGCTAC  >  NC_002947/4110336‑4110434                                                                                                                                                                                                            AAACCCAGCGCAATCGCCGGGTATCCGGCTAAACGCGCAAACAGATTGCTACTCAAAAACTTGATAACCCCATTGCCACAGCGCCGGGCATGGC‑CTTTGGCAATGGGGTTATCAAGT                                                                                      <  1:427614/117‑1 AAACCCAGCGCAATCGCCGGGTATCCGGCTAAACGCGCAAACAGATTGCTACTCAAAAACTTGATAACCCCATTGCCACAGCGCCGGGCATGGC‑CTTTGGCAATGGGGTTATCAAGT                                                                                      >  2:427614/1‑117                                                                     CCCATTGCCAAAG‑GCCATGCCCGGCGCTGTGGCAATGGGGTTATCAAGTTTTTGAGTAGCAATCTGTTTGCGCGTTTAGCCGGATACCCGGCGATTGCGCTGGGTTTTTTCGCGGACGGTACTAAGGCGCTAC  <  1:377320/133‑1                                                                     CCCATTGCCAAAG‑GCCATGCCCGGCGCTGTGGCAATGGGGTTATCAAGTTTTTGAGTAGCAATCTGTTTGCGCGTTTAGCCGGATACCCGGCGATTGCGCTGGGTTTTTTCGCGGACGGTACTAAGGCGCTAC  >  2:377320/1‑133                                                                                                                                                                                                            AAACCCAGCGCAATCGCCGGGTATCCGGCTAAACGCGCAAACAGATTGCTACTCAAAAACTTGATAACCCCATTGCCAAAG‑GCCATGCCCGGCGCTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4110408‑4110307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaATGGGGTTATCAAGTTTTTGAGTAGCAATCTGTTTGCGCGTTTAGCCGGATACCCGGCGATTGCGCTGGGTTTTTTCGCGGACGGTACTAAGGCGCTAC  >  NC_002947/4110336‑4110434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.