New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5914213 =	19 (0.820)	7 (0.390)	7/198	NT	31.3%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914309 =	16 (0.880)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

GGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5914380‑5914213 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAAC  >  NC_002947/5914309‑5914455                                                                                                                                                                                                                                                                                                                             GGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGC                                                                                                                                                                       <  2:290726/150‑1            CTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                            <  1:395414/150‑1                 CTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGG                                                                                                                                                       <  1:429089/150‑1                    TACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                            <  2:87511/142‑1                    TACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                            >  1:87511/1‑142                                                                                                CTCCCACAGGTAAGTCACAGGCTCAAACCGTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAG                                                                        >  1:84023/1‑150                                                                                                 TCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGC                                                                       >  1:165590/1‑150                                                                                                   CCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCG                                                                     >  1:10084/1‑150                                                                                                   CCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCG                                                                     <  2:165590/150‑1                                                                                                    CACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGC                                                                    >  2:399328/1‑150                                                                                                         GTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAA                                                                                                                 >  2:152163/1‑100                                                                                                         GTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAA                                                                                                                 <  1:152163/100‑1                                                                                                                                             GGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTG                           <  2:395414/150‑1                                                                                                                                                     GCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGC                   <  2:429089/150‑1                                                                                                                                                             GCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTC           >  1:526573/1‑150                                                                                                                                                                 AGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCA       <  1:292477/150‑1                                                                                                                                                                 AGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTAAGCA       <  1:399328/150‑1                                                                                                                                                                      GCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAAC  >  1:393621/1‑150                                                                                                                                                                                                                                                                                                                             GGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5914380‑5914213 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAAC  >  NC_002947/5914309‑5914455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.