| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_002947 | 6,098,315 | Δ9 bp | 100% | coding (822‑830/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6098315 | 6098323 | 9 | 46 [0] | [0] 46 | PP_5350 | RpiR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098324 = | 0 (0.000) | 38 (1.790) | 31/232 | NT | 100% | coding (821/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098314 | 0 (0.000) | coding (831/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
ACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6098480‑6098324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGC < NC_002947/6098314‑6098170 cgatctCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGAACCGGT‑AACCACCTGAAGAGCGTGAAACGCA < 1:475873/144‑1 TGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCT > 1:197702/1‑150 ACGTGACTGAAACCACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGT < 2:174943/150‑1 GCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCC < 2:174299/150‑1 GACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCG > 1:337047/1‑150 ACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATC > 2:556062/1‑150 ACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATC > 2:525133/1‑150 ACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATC > 1:409217/1‑150 GAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG > 2:17735/1‑150 ACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCG > 2:531392/1‑150 ACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGAC < 2:409217/150‑1 CCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGA > 2:82577/1‑150 CACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACT < 2:337047/150‑1 TGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAA < 2:197702/150‑1 CTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCA > 1:101374/1‑150 TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA < 1:509372/150‑1 TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA < 1:556062/150‑1 CGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAAC < 2:101374/150‑1 ATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACC < 1:221013/129‑1 ATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACC > 2:221013/1‑129 TTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG < 2:433296/122‑1 TTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG > 1:433296/1‑122 CTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGT < 1:17735/150‑1 GGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCG > 2:271394/1‑150 GTGATCGACGTGCTGGCCTTGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG < 2:373163/150‑1 GTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG < 1:547857/150‑1 GTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG > 1:40784/1‑150 GCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCT > 1:139202/1‑150 CCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCAC > 1:507444/1‑150 ATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAG < 1:415412/150‑1 ATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG > 1:432422/1‑90 ATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG < 2:432422/90‑1 GCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTAC > 2:363871/1‑150 GCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTAATGGCATGTTCGCGGGCTTGCCCGCTCCCACAGGTAC > 1:460460/1‑150 CATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG < 1:278364/121‑1 CATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG > 2:278364/1‑121 GGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATC < 2:40784/150‑1 CTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT > 2:17073/1‑150 AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT < 1:17073/150‑1 CCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTAATGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAA < 2:460460/150‑1 CTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAAC < 1:525133/150‑1 TGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCC > 2:486004/1‑150 GAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTG < 1:47034/132‑1 GAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTG > 2:47034/1‑132 AACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGC < 2:139202/150‑1 CTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGG > 1:598664/1‑89 CTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGG < 2:598664/89‑1 TTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGC < 1:362986/150‑1 ACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAG‑CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6098480‑6098324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGC < NC_002947/6098314‑6098170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |