| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 72619 | 16 (0.690) | 6 (0.270) | 6/242 | NT | 26.5% | coding (230/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha |
| ? | NC_002947 | = 72634 | 18 (0.810) | coding (215/948 nt) | glyQ | glycine‑tRNA ligase subunit alpha | |||||
TCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTACTTCCATATCGTAGGGCTGAAGTACCACA > NC_002947/72470‑72768 | tCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT > 1:18832‑M1/1‑150 (MQ=255) gCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑Tgg < 2:457596/150‑1 (MQ=255) cGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑Tggg < 2:18832/150‑1 (MQ=255) cAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑Tg < 2:169262/141‑1 (MQ=255) cAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑Tg > 1:169262/1‑141 (MQ=255) gTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTatggcgaaaaccccaa < 1:546905‑M1/150‑17 (MQ=255) cTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTatggcgaaaaccccaacc < 1:310105‑M1/150‑19 (MQ=255) aacgaaTGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCgg > 2:44409/1‑150 (MQ=255) aacgaaTGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCgg > 1:427360/1‑150 (MQ=255) cgaaTGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTTGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCa < 1:44409/150‑1 (MQ=255) gaaTGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGATACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTatggcgaaaaccccaaccgcctgcagcact > 1:165361‑M1/1‑120 (MQ=255) tCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGgacga < 1:569443/150‑1 (MQ=255) gATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTATGGCGAAAACCCCAccgcctgcagcactactaccagttccaggtgg > 2:165361‑M2/1‑118 (MQ=255) aGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAg > 1:317603/1‑150 (MQ=255) aGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAg > 2:320944/1‑150 (MQ=255) gCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAggc < 2:240453/150‑1 (MQ=255) tttCAGCGAGCCGACGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCCCAGTGCGGCTACAGCACGAGGGCTGCCCGTGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCa < 1:44181/150‑1 (MQ=255) ttCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTatggcgaaaaccccaaccgcctgc < 1:128286‑M1/109‑25 (MQ=255) ttCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGTatggcgaaaaccccaaccgcctgc > 2:128286‑M1/1‑85 (MQ=255) gAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCt < 2:380613/150‑1 (MQ=255) ccGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGa < 1:421396/150‑1 (MQ=255) gAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGaa > 1:186736/1‑150 (MQ=255) ccaccTGGAACTGGTAGTAGTGCTGCAGGCGGTtggggttttcgccataccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtacctcggctcgctgaaagccatcggcctggatc > 2:165361‑M1/1‑33 (MQ=255) ccaccTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGgcgc < 1:320944/150‑1 (MQ=255) ccTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTa > 2:558413/1‑150 (MQ=255) cTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTAc > 1:524139/1‑150 (MQ=255) agtGCTGCAGGCGGT‑TGGGGTTTTCGCCATaccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtatctcggctcgctgaaagccatcggcctggatccgctggtgcacgacattc > 1:165361‑M2/1‑30 (MQ=255) gtGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTACTTCCATATCGTAggg < 2:186736/150‑1 (MQ=255) tgctgcAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGTAAAGTGCCGGCGCCTACTTCCATATCGTAGGGc < 1:272195/150‑1 (MQ=255) gcAGGCGGT‑TGGGGTTTTCGCCATaccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtacctcggctcgctgaa > 2:128286‑M2/1‑24 (MQ=255) gcAGGCGGT‑TGGGGTTTTCGCCATaccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtacctcggctcgctgaa < 1:128286‑M2/109‑86 (MQ=255) ggT‑TGGGGTTTTCGCCATaccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtacctcggctcgctgaaagccatcggcctggatccgctggtgcacgacattcgtttcgtcgaag < 1:310105‑M2/150‑133 (MQ=255) gT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTACTTCCATATCGTAGGGCTGAAGTACcac < 2:524139/150‑1 (MQ=255) t‑tGGGGTTTTCGCCATaccgcctgcagcactactaccagttccaggtggtgctcaaaccgaacccggccaacttccaggagctgtacctcggctcgctgaaagccatcggcctggatccgctggtgcacgacattcgtttcgtcgaagac < 1:546905‑M2/150‑135 (MQ=255) | TCGGCGATTCCCAGTTGTCTTCGACGAAACGAATGTCGTGCACCAGCGGATCCAGGCCGATGGCTTTCAGCGAGCCGAGGTACAGCTCCTGGAAGTTGGCCGGGTTCGGTTTGAGCACCACCTGGAACTGGTAGTAGTGCTGCAGGCGGT‑TGGGGTTTTCGCCATACCGCCCGTCGGCAGGACGACGGCTAGGCTGCACATAGGCGGCGTTCCAGGTTTCTGGACCCACGGCGCGCAGGAATGTAGCGGTGTGGAAAGTGCCGGCGCCTACTTCCATATCGTAGGGCTGAAGTACCACA > NC_002947/72470‑72768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |