| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 235331 = | 29 (1.240) | 5 (0.250) | 5/222 | NT | 17.4% | intergenic (+28/+97) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
| ? | NC_002947 | 235390 = | 22 (1.080) | intergenic (+87/+38) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase | |||||
CCCGCAGGCCAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCT > NC_002947/235183‑235477 | tgctgacgctggaaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGc < 2:267292‑M1/2‑1 (MQ=255) gctggaaggctcggtgaatgcgcgtgaccacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTcc < 2:19556‑M1/9‑1 (MQ=255) cAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCca < 1:165569/150‑1 (MQ=255) tGATGGGGGAGAACCCGCACATGCAGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGTAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGtttt > 2:101921/1‑150 (MQ=255) ggggAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCCGCGGCAAGCGCTGCGTCTGGTGTTGCGCCCTTCGCGGGCCTGCCCGCTCCCACTGGT‑CTGCAC‑CGTTTTTGaaa < 1:474934/150‑1 (MQ=255) gggAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAAc > 1:202808/1‑150 (MQ=255) cacattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTtg < 1:461896‑M1/37‑1 (MQ=255) agaACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTtg > 2:331486/1‑150 (MQ=255) acattggtggtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTtgt > 2:461896‑M1/113‑150 (MQ=255) acGCACATGCCGCGGAACTTGGCGGAAAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGAAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGACAGCTCCCACAGGT‑CTGCAA‑CGTTTTTGAAACTTGTGCAt > 2:583633/2‑150 (MQ=255) gtacggcgccggcgcaggtgcgtgctgccgtcgttcgtggcaaggccctgttggcgtctcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCt > 1:19556‑M1/104‑150 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAg < 1:213071/111‑1 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAg > 2:213071/1‑111 (MQ=255) gcgGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGa > 1:19292/1‑150 (MQ=255) ggACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGaa > 1:263056/1‑117 (MQ=255) ggACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGaa < 2:263056/117‑1 (MQ=255) aGGAAGCGTCGATGCCGTCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAAC‑GGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGaa < 1:328791/150‑1 (MQ=2) ggAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAAc > 1:267292/1‑150 (MQ=255) aGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAg < 1:387684/150‑1 (MQ=255) gCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGcc < 1:606174/150‑1 (MQ=255) cTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCgtt < 1:198976/150‑3 (MQ=255) ttCATGGAGATGATCCGCAGCGGCAAGCGCCGAGTCAGGCTTTGAGCCCTTCACCAAGGGGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCTTTACCTGTGGGAGCGGGCGTTCCCGCGAACGAGGGCTTCGCCCTCgttc < 1:101921/150‑4 (MQ=255) cATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTg < 2:535498/150‑1 (MQ=255) aTGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg > 2:38907/1‑150 (MQ=255) tcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCAtt < 1:288031‑M1/43‑1 (MQ=255) tcgctaatcccccaaggcgagggcttcgccctcgttcgcgggcacGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCAtt > 2:288031‑M1/46‑88 (MQ=255) gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAg < 1:604440/58‑1 (MQ=255) gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAg > 2:604440/1‑58 (MQ=255) gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCgaga > 1:202714/1‑150 (MQ=255) gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGACAAGGGCCGACGCCGCGAACTAGGGCGAAGCCCTCGCCTTGGGGGATTAGCgaga > 1:138539/1‑150 (MQ=255) gCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCaa > 2:334766/1‑150 (MQ=255) gcTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGc > 2:75554/1‑150 (MQ=255) tgtTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCacgaa < 2:202808/150‑1 (MQ=255) gAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAacgac < 2:202714/150‑1 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgca < 1:334766/150‑1 (MQ=255) ttCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagc < 1:331486/150‑1 (MQ=255) cATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt < 1:402314/150‑1 (MQ=255) | CCCGCAGGCCAAGGCGTTGCTGCAACTGATGGGGGAGAACCCGCACATGCCGCGGATCTTGGCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGT‑CTGCAC‑CGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCT > NC_002947/235183‑235477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |