| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1037796 | 13 (0.560) | 5 (0.260) | 5/208 | NT | 28.1% | intergenic (+38/+78) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase |
| ? | NC_002947 | = 1037828 | 15 (0.790) | intergenic (+70/+46) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase | |||||
AGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGA > NC_002947/1037648‑1037945 | aGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCaa > 1:537707/1‑150 (MQ=255) tgtgAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTg < 2:549118/150‑1 (MQ=255) ttGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTa < 2:331132/150‑1 (MQ=255) ttGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTa < 2:177907/150‑1 (MQ=255) ggaggaAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCt > 1:348987/1‑145 (MQ=255) ggaggaAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCt < 2:348987/145‑1 (MQ=255) gaggaAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcat > 1:337632‑M1/1‑119 (MQ=255) ggAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGt > 2:537707‑M2/1‑149 (MQ=255) ggAAGGGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGt > 2:131529‑M2/1‑149 (MQ=255) tGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTACGCTTCTGGCTTGCGCTGTACGTGttggtgtgcgcttgc < 1:451140‑M2/150‑16 (MQ=255) aGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCATGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagag < 1:535251‑M1/150‑58 (MQ=255) gtTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggc < 1:272710‑M2/127‑12 (MQ=255) gtTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggc > 2:272710‑M2/1‑116 (MQ=255) ccTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcat < 2:337632‑M1/150‑72 (MQ=255) tGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCGCTTCGCGGTCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTGGCGCTGTACGTGTTGAGTCAGCCTTGCCCGCGGAGCAGCCGCCGCAGTTACAt > 1:188170/1‑150 (MQ=255) gggACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgg < 2:102473‑M1/114‑42 (MQ=255) gggACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgg > 1:102473‑M1/1‑73 (MQ=255) gAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggctt < 2:375384‑M2/107‑14 (MQ=255) gAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggctt > 1:375384‑M2/1‑94 (MQ=255) agagagTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAg < 2:578363/150‑1 (MQ=255) agacagGCCTGTGATGACTGTTGCGGCCTCTTCTCGTGCAATCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCTCGCGAAGCAGCTGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAg < 2:245695/150‑1 (MQ=255) tgtgATGACTGTGGCGGCCTCTTAACGGACCCACAAGCTCCCACATGGGAAGCCTTCTGACTTGCGCTGTTCGGGTGGGAGCGGGCGGGTCCGCGAATCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGc > 2:70537/1‑150 (MQ=255) atgaCTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagcagccgccgcagtcatcacaggactctctcgaactgctccggccagtcccgccagg < 2:337632‑M2/150‑80 (MQ=255) atgaCTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATc > 1:584794/1‑150 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacatgactctctcgaactgctccggccagtcccgccaggtaaacacctgccct < 1:535251‑M2/150‑94 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagg > 2:568792/1‑150 (MQ=255) ctccgcgGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCAGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcaggg < 1:67420/147‑1 (MQ=255) gCAAGCGCACACCAAcacgtacagcgcaagccagaagcgtacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctca < 1:451140‑M1/150‑136 (MQ=255) aaGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctc > 1:375384‑M1/1‑13 (MQ=255) aaGCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctc < 2:375384‑M1/107‑95 (MQ=255) gCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaac > 2:272710‑M1/1‑11 (MQ=255) gCCCGCTCCCAcacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaac < 1:272710‑M1/127‑117 (MQ=255) cccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAt < 2:451140/150‑1 (MQ=255) ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtccc > 1:102473‑M2/1‑41 (MQ=255) ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtccc < 2:102473‑M2/114‑74 (MQ=255) acacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcacccgccgcccttcc > 2:131529‑M1/1‑1 (MQ=255) acacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcacccgccgcacttcc > 2:537707‑M1/1‑1 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGa > 1:434784/1‑150 (MQ=255) | AGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGA > NC_002947/1037648‑1037945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |