New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1573491 =	26 (1.120)	4 (0.180)	4/242	NT	13.2%	coding (207/792 nt)	pcaD	3‑oxoadipate enol‑lactonase
	?	NC_002947	1573532 =	28 (1.260)					coding (248/792 nt)	pcaD	3‑oxoadipate enol‑lactonase

TGTCCAACTCGCTGGGTACCGACCTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGC  >  NC_002947/1573361‑1573638                                                                                                                                   |                                                                                                                                                    tGTCCAACTCGCTGGGTACCGACCTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCcgcg                                                                                                                                  >  2:352613/1‑150 (MQ=255)              cggccgtgttgcacagggtcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaattgagccttttgaatgtcccggcCATCGA‑‑‑GCTGTGCCGCGACGTGCTGGCCCTGCt                                                                                                                  >  1:321493‑M1/118‑150 (MQ=255)                      ttgcacagggtcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaagtgagccttttgaatgtccaggcCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATg                                                                                                             >  1:382628‑M1/110‑150 (MQ=255)                      aCCTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATg                                                                                                             <  2:59781/150‑1 (MQ=255)                        cTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                           >  2:166995/1‑150 (MQ=255)                             cATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGa                                                                                                      >  1:121898/1‑150 (MQ=255)                                tcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaagtgagccttttgaatgtccaggcCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATgg                                                                                                            <  2:356461‑M1/42‑1 (MQ=255)                                tcaggctgtgcaggcgctcacctgcatggatacccagccactggccgatcaggccgcccatcgacaggccgacgaagtgagccttttgaatgtccaggcCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATgg                                                                                                            >  1:356461‑M1/100‑141 (MQ=255)                                 tgGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACAtt                                                                                                  >  2:5515/1‑150 (MQ=255)                                   ggACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCa                                                                                                <  1:5515/150‑1 (MQ=255)                                         ccAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCaaaa                                                                                             >  1:23124/1‑147 (MQ=255)                                         ccAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCaaaa                                                                                             <  2:23124/147‑1 (MQ=255)                                                  gCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTtcgc                                                                                 >  2:193081/1‑149 (MQ=255)                                                     ctGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCgg                                                                              >  2:149456/1‑150 (MQ=255)                                                               cACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATg                                                                    <  1:149456/150‑1 (MQ=255)                                                                       ggTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCCGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGACt                                                            <  1:352613/150‑1 (MQ=255)                                                                        gTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTg                                                           >  2:166152/1‑150 (MQ=255)                                                                                        cccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                           <  1:166152/150‑1 (MQ=255)                                                                                         ccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCAc                                                                                      <  2:83064/106‑1 (MQ=255)                                                                                         ccGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCAc                                                                                      >  1:83064/1‑106 (MQ=255)                                                                                                cACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCAt                                   >  1:218572/1‑150 (MQ=255)                                                                                                        aTCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGa                           <  2:121898/150‑1 (MQ=255)                                                                                                              ggTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCt                     <  2:218572/150‑1 (MQ=255)                                                                                                               gTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGAGACGTGCTGGATATGCTTGATGGCCTTGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTg                    >  1:168162/1‑150 (MQ=255)                                                                                                                tCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGc                   >  1:492124/1‑150 (MQ=255)                                                                                                                      aaGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                           >  1:29271/1‑56 (MQ=255)                                                                                                                      aaGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGc                                                                                                           <  2:29271/56‑1 (MQ=255)                                                                                                                         gCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGa          >  1:400249/1‑150 (MQ=255)                                                                                                                           ccTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGAcc        >  2:610139/1‑150 (MQ=255)                                                                                                                            cTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGAccc       >  1:366468/1‑150 (MQ=255)                                                                                                                                 aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                           >  2:214671/1‑109 (MQ=255)                                                                                                                                 aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTgg                                           <  1:214671/109‑1 (MQ=255)                                                                                                                                 aGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGc  >  1:383816/1‑150 (MQ=255)                                                                                                                                   |                                                                                                                                                    TGTCCAACTCGCTGGGTACCGACCTGGGCATGTGGGACACCCAGATTCCGCTCTGGAGTCAGCACTTCCGGGTGCTGCGCTATGACACCCGTGGTCACGGCGCATCGCTGGTCACTGAAGGCCCTTACAGCATCGAACAGCTGGGCCGCGACGTGCTGGCCCTGCTCGATGGCCTGGACATTCAAAAGGCTCACTTCGTCGGCCTGTCGATGGGCGGCCTGATCGGCCAGTGGCTGGGTATCCATGCAGGTGAGCGCCTGCACAGCCTGACCCTGTGC  >  NC_002947/1573361‑1573638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.