| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2048837 = | 29 (1.240) | 4 (0.200) | 4/220 | NT | 17.0% | intergenic (+33/+106) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein |
| ? | NC_002947 | 2048928 = | 14 (0.690) | intergenic (+124/+15) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein | |||||
TACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTG > NC_002947/2048694‑2048983 | tACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTtgtg < 1:100863/150‑1 (MQ=255)tACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTtgtg < 1:273450/150‑1 (MQ=255) gcgcAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCgag > 2:579225/1‑148 (MQ=255) gcagcaGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGACACAAG‑TGTTCCGACGCTGAAAACCGACCCCTTTTCACGGCCCTTCCGCAATCCTGGTGGGAGCGGGCGTGcc > 1:11239/1‑150 (MQ=255) gcagcaGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGcc > 2:202345/1‑150 (MQ=255) gcagcaGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGcc > 1:276557/1‑150 (MQ=255) cagGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTgg < 2:377407/133‑1 (MQ=255) cagGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTgg > 1:377407/1‑133 (MQ=255) gccgggtgaaagtgccatgcctgcgcattgaagaagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcc > 2:255622‑M1/126‑126 (MQ=255) gccgggtgaaagtgccatgcctgcgcattgaagaagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcc < 1:255622‑M1/1‑1 (MQ=255) ggCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCg > 1:59699/1‑150 (MQ=255) aGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGc < 2:276557/150‑1 (MQ=255) ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAaccac > 2:156725/1‑150 (MQ=255) ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGACACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTCTCAAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAaccac > 1:49675/1‑150 (MQ=255) gggCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCgg < 1:240687/102‑1 (MQ=255) gggCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCgg > 2:240687/1‑102 (MQ=255) ggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTtgtg < 1:134190‑M1/7‑1 (MQ=255) ggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTtgtg > 2:134190‑M1/83‑89 (MQ=255) gctggAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGGGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTcgc < 2:500660/150‑1 (MQ=255) tggAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCgg < 2:11239/150‑1 (MQ=255) gcCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCca < 2:557078/150‑1 (MQ=255) tccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGc < 1:356389‑M1/73‑1 (MQ=255) tccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGc > 2:356389‑M1/64‑136 (MQ=255) aCCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACaa < 1:290419/150‑1 (MQ=255) aCCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACaa < 1:143316/150‑1 (MQ=255) ggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCg > 2:515963‑M1/59‑71 (MQ=255) ggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCg < 1:515963‑M1/13‑1 (MQ=255) gcgG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGa > 1:82990/1‑150 (MQ=255) g‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTGCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCt < 1:19001/150‑1 (MQ=255) gcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGc > 2:37680‑M1/49‑125 (MQ=255) gcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGc < 1:37680‑M1/77‑1 (MQ=255) cTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATgg < 1:156725/150‑1 (MQ=255) cGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAc < 1:202345/150‑1 (MQ=255) cTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCt > 2:10268/1‑150 (MQ=255) aGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATcc > 2:521947/1‑146 (MQ=255) aGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATcc < 1:521947/146‑1 (MQ=255) gcgcTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACAGGCGCAGc < 1:518848/52‑1 (MQ=255) gcgcTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACAGGCGCAGc > 2:518848/1‑52 (MQ=255) tGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCgat < 2:82990/150‑1 (MQ=255) aaTCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGGCAACCACCGCCGTGCCTCCTTCGCCGGCTCGCCCGCTCCCACACAGGATCTGCCGCGTCAGTCAGATGGCCGCAAACCGCTCATCCAGCTAACCGATGATTg > 1:400584/1‑150 (MQ=37) | TACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGG‑CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTG > NC_002947/2048694‑2048983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |