New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2274124 =	29 (1.240)	5 (0.230)	4/238	NT	16.6%	coding (286/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	2274156 =	23 (1.050)					coding (254/1041 nt)	PP_2004	AraC family transcriptional regulator

GCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGC  >  NC_002947/2273999‑2274265                                                                                                                              |                                                                                                                                              gCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCGCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGc                                                                                                                       <  2:207669/150‑1 (MQ=255)   tGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCa                                                                                                                     <  1:371739/150‑1 (MQ=255)     aTGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCATCAACGGGTGTTTTGCCGCGGTAGTTGGCCGCGGAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGAGGGGGCCTGGGCCGCAGTGACCCCGGCCAgg                                                                                                                   >  1:107875/1‑150 (MQ=255)      cgaagccggcgcacgcctgtccataccccgctacatgcacatgggccacgcagccatcgaaatgagcggtgaggccgctttaggtctgcgtatggggcgcctcagccggctggcgcatacGGGCCTGGGCCGCAGTGACCCCGGCCAGGc                                                                                                                  >  1:541598‑M1/121‑150 (MQ=255)           tAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTa                                                                                                             >  2:270391/1‑150 (MQ=255)            aGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTAt                                                                                                            <  2:253554/150‑1 (MQ=255)                gcgcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGGCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATgagc                                                                                                        >  2:85301/1‑150 (MQ=255)                gcgcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATgcgc                                                                                                        >  1:523385/1‑150 (MQ=255)                  gcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGGGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCa                                                                                                      <  2:608173/150‑1 (MQ=255)                   cAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGccc                                                                                                                <  2:70957/139‑1 (MQ=255)                   cAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGccc                                                                                                                >  1:70957/1‑139 (MQ=255)                            gcCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCa                                                                                                                                  <  2:606895/112‑1 (MQ=255)                            gcCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCa                                                                                                                                  >  1:606895/1‑112 (MQ=255)                              ccTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGgc                                                                                          >  1:400846/1‑150 (MQ=255)                                                       aTGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGc                                                                 <  2:538671/150‑1 (MQ=255)                                                             atcgaaatgagcggtgaggccgctttaggtctgcgtatggggcgcctcagccggctggcgcatacGGGCCTGGGCCGCAGTGACCCCGGCCAGGc                                                                                                                  <  1:436155‑M1/30‑1 (MQ=255)                                                             atcgaaatgagcggtgaggccgctttaggtctgcgtatggggcgcctcagccggctggcgcatacGGGCCTGGGCCGCAGTGACCCCGGCCAGGc                                                                                                                  >  2:436155‑M1/66‑95 (MQ=255)                                                               ggTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGc                                                         <  1:296367/150‑1 (MQ=255)                                                               ggTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCCTATGCGCCAGCCGGCCGAGGCCCCCCCTACGCCGCCCTCAAGCGGCCTCAcccc                                                         >  2:487813/1‑148 (MQ=255)                                                                   gTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCAt                                                     <  1:270391/150‑1 (MQ=255)                                                                        ccGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTAGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCACGTCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGa                                                <  1:347966/150‑1 (MQ=255)                                                                         cgcgTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                               >  2:488338/1‑150 (MQ=255)                                                                                 gCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGt                                       >  2:318305/1‑150 (MQ=255)                                                                                 cgctttaggtctgcgtatggggcgcctcagccggctggcgcatacGGGCCTGGGCCGCAGTGACCCCGGCCAg                                                                                                                    >  2:438626‑M1/46‑73 (MQ=255)                                                                                 cgctttaggtctgcgtatggggcgcctcagccggctggcgcatacGGGCCTGGGCCGCAGTGACCCCGGCCAg                                                                                                                    <  1:438626‑M1/28‑1 (MQ=255)                                                                                    gCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGc                                    <  1:488338/150‑1 (MQ=255)                                                                                      tCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGACTGCGTGGcac                                  >  2:260866/1‑148 (MQ=255)                                                                                        gAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCAt                                <  1:569585/150‑1 (MQ=255)                                                                                          aaCGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCAtgt                              >  2:265793/1‑150 (MQ=255)                                                                                            cGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGc                            <  1:605176/150‑1 (MQ=255)                                                                                            cGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGc                            >  2:65843/1‑150 (MQ=255)                                                                                             gcagcaGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCa                           <  2:523385/150‑1 (MQ=255)                                                                                                                 tCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAgg       <  2:400846/150‑1 (MQ=255)                                                                                                                      cAGGGTTGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTgc  <  1:487813/150‑1 (MQ=255)                                                                                                                              |                                                                                                                                              GCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGC  >  NC_002947/2273999‑2274265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.