| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3135354 | 27 (1.160) | 6 (0.280) | 6/236 | NT | 18.2% | intergenic (+23/‑37) | PP_2751/PP_2752 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3135365 | 29 (1.340) | intergenic (+34/‑26) | PP_2751/PP_2752 | hypothetical protein/hypothetical protein | |||||
ATGGGTGCTGGTGACCGACTGGATCCAGGCCGACCGCACCACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTA > NC_002947/3135205‑3135498 | aTGGGTGCTGGTGACCGACTGGATCCAGGCCGACCGCACCACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC < 1:277249‑M1/150‑1 (MQ=255) ggTGACCGACTGGATCCAGGCCGACCGCACCACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCcacgcgacg > 1:190167‑M1/1‑141 (MQ=255) tGACCGACTGGATCCAGGCCGACCGCACCACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCcacgcgacggt < 2:190167‑M1/150‑12 (MQ=255) accTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGTGGCTGTGGAGAAAGACcatgc > 2:320883/1‑150 (MQ=255) gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCCACGCGACG‑GTGgccgggcgtaggtcataggggtttattgctcgt > 1:464085‑M2/1‑111 (MQ=255) gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCCACGCGACG‑GTGgccgggcgtaggtcataggggtttattgctcgt < 2:464085‑M2/144‑34 (MQ=255) gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTg > 2:445463/1‑150 (MQ=255) tCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACg > 1:215210/1‑150 (MQ=255) gCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTa > 2:563565/1‑150 (MQ=255) ccAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCGATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTAt > 1:335288/1‑150 (MQ=255) aaGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcg > 1:98963/1‑150 (MQ=255) tCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgccg > 2:421565/1‑150 (MQ=255) gccgccTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCtacgcgacggtggccgggcgtag > 1:171325‑M1/1‑80 (MQ=255) gccgccTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCtacgcgacggtggccgggcgtag < 2:171325‑M1/103‑24 (MQ=255) cAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGgcgc > 1:417488/1‑150 (MQ=255) ggAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGTGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTc < 1:320883/150‑1 (MQ=255) ggCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCt > 2:363482/1‑150 (MQ=255) aCCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTAcgccg > 2:122950/1‑150 (MQ=255) ccGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgcc < 1:46234/116‑1 (MQ=255) ccGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgcc > 2:46234/1‑116 (MQ=255) cgcgTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCt > 1:603718/1‑150 (MQ=255) ttGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTg < 1:122950/150‑1 (MQ=255) aaCGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGccc > 1:564283/1‑150 (MQ=255) aaCGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGccc > 1:564317/1‑150 (MQ=255) aCGAGCAATAAACCCCTATGACCTACGCCCGG‑Ccaccgtcgcgtgggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggcggacttggcctcgatcagc < 2:464085‑M1/144‑112 (MQ=255) aCGAGCAATAAACCCCTATGACCTACGCCCGG‑Ccaccgtcgcgtgggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggcggacttggcctcgatcagc > 1:464085‑M1/1‑33 (MQ=255) cAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAggcgg < 1:445463/150‑1 (MQ=255) aTAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTgg < 2:589755/54‑1 (MQ=255) aTAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTgg > 1:589755/1‑54 (MQ=255) ccTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGCAACAAAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAAc > 1:291077/1‑150 (MQ=255) cTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACa > 1:516542/1‑150 (MQ=255) tATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACaa < 1:421565/150‑1 (MQ=255) aTGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAAt > 1:109489/1‑150 (MQ=255) cTACGCCCGGCC‑AC‑CGTCGCGTAggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggc < 2:171325‑M2/103‑81 (MQ=255) cTACGCCCGGCC‑AC‑CGTCGCGTAggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggc > 1:171325‑M2/1‑23 (MQ=255) tACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTcc < 2:215210/150‑1 (MQ=255) tACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTcc < 1:363482/150‑1 (MQ=255) ccGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTa > 1:108606/1‑150 (MQ=255) | ATGGGTGCTGGTGACCGACTGGATCCAGGCCGACCGCACCACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTA > NC_002947/3135205‑3135498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |