New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3382182	18 (0.770)	4 (0.180)	4/244	NT	22.0%	coding (148/480 nt)	PP_2984	hypothetical protein
	?	NC_002947	= 3382219	11 (0.490)					coding (185/480 nt)	PP_2984	hypothetical protein

CACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGAAAAAGCCGCGCGCCTAAAAGGCTTTGTCAGCAGTTGGTCGAACCTGAAACCGGC  >  NC_002947/3382039‑3382330                                                                                                                                                |                                                                                                                                                     cACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAg                                                                                                                                                >  2:34796/1‑150 (MQ=255)  aCGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGt                                                                                                                                               >  2:403370/1‑150 (MQ=255)                  cAAAGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTgcgc                                                                                                                               >  2:310680/1‑150 (MQ=255)                    aaGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGGGCGCGAACTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCaa                                                                                                                             <  2:6813/150‑1 (MQ=255)                    aaGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTgc                                                                                                                                 >  2:40367/1‑146 (MQ=255)                    aaGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTgc                                                                                                                                 <  1:40367/146‑1 (MQ=255)                    aaGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCaa                                                                                                                             >  1:387779/1‑150 (MQ=255)                      gCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGc                                                                                                                           <  1:388581/150‑1 (MQ=255)                                  tCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCttctgttcaggcttgcgcagcttgcccgccacttcacgc                                                                                                               >  2:117432‑M1/1‑111 (MQ=255)                                  tCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgc                                                                                                               <  2:584973‑M2/150‑3 (MQ=255)                                     tGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgctgc                                                                                                            >  1:403370‑M2/1‑145 (MQ=255)                                      ggAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCttctgttcaggcttgcgcagcttgcccgccacttcacgctgca                                                                                                           <  1:117432‑M1/150‑44 (MQ=255)                                           cTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGccc                                                                                                      >  2:546243/1‑150 (MQ=255)                                                            cTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCttctgttcaggcttgcgcagcttgcccgccacttcacgctgcagga                                                                                                        <  1:369233‑M1/131‑47 (MQ=255)                                                            cTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCttctgttcaggcttgcgcagcttgcccgccacttcacgctgcagga                                                                                                        >  2:369233‑M1/1‑85 (MQ=255)                                                                   aaGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTc                                                                              <  1:34796/150‑1 (MQ=255)                                                                        gCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGc                                                                                                                                            <  1:583843/83‑1 (MQ=255)                                                                        gCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGc                                                                                                                                            >  2:583843/1‑83 (MQ=255)                                                                               aTGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAATCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCtgtg                                                                  <  1:310680/150‑1 (MQ=255)                                                                                                gCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGAAAAAGcc                                                 <  1:546243/150‑1 (MQ=255)                                                                                                            tgGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGAAAAAGCCGCGCGCCTaaaa                                     <  2:387779/150‑1 (MQ=255)                                                                                                                    cgagCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGAAAAAGCCGCGCGCCTAAAAGGCTTTGt                             >  1:177904/2‑150 (MQ=255)                                                                                                                                        tCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaag                            <  1:369233‑M2/131‑86 (MQ=255)                                                                                                                                        tCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaag                            >  2:369233‑M2/1‑46 (MQ=255)                                                                                                                                           tGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaaggcgctgctgggtgacagtctcc      <  1:117432‑M2/150‑108 (MQ=255)                                                                                                                                           tGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCaa                                                            >  1:164229/1‑96 (MQ=255)                                                                                                                                           tGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCaa                                                            <  2:164229/96‑1 (MQ=255)                                                                                                                                            gCAGCttctgttcaggcttgcgcagcttgcccgccacttcacgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaaggcgctgctgggtgacagtctcca     >  1:403370‑M1/1‑5 (MQ=255)                                                                                                                                               gCttctgttcaggcttgcgcagcttgcccgccacttcacgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaaggcgctgctgggtgacagtctccagga  <  2:584973‑M1/150‑149 (MQ=255)                                                                                                                                               gCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAgctgcaggaccggcacgaggtcgcgctcttcgtaccacaactgcttggcgagctccacaagagcatcggacgcaacttggctaaggcgctgctgggtgacagtctccagga  >  2:117432‑M2/1‑39 (MQ=255)                                                                                                                                                |                                                                                                                                                     CACGCCTGGATCGTAAACAAAGCTTTGGCGCGCTCCTGGAGACTGTCACCCAGCAGCGCCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTCGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCGGTCCTGCAGCGTGAAGTGGCGGGCAAGCTGCGCAAGCCTGAACAGAAGCTGCGAGCCCTCTATCTGGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGAAAAAGCCGCGCGCCTAAAAGGCTTTGTCAGCAGTTGGTCGAACCTGAAACCGGC  >  NC_002947/3382039‑3382330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.