| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3464323 | 23 (0.990) | 4 (0.210) | 4/206 | NT | 15.5% | coding (78/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 3464362 | 25 (1.320) | coding (39/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein | |||||
TTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCG > NC_002947/3464174‑3464469 | tttACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCTGAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAA < 1:344188‑M1/150‑1 (MQ=255) tCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGa < 1:434512/150‑1 (MQ=255) ggAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACg > 2:442597/1‑150 (MQ=255) aaGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAg < 1:442597/150‑1 (MQ=255) gggggCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCct > 2:373287/1‑150 (MQ=255) tCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcg > 2:159425‑M1/1‑105 (MQ=255) aCCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcggg > 1:373287‑M2/1‑142 (MQ=255) cGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACGATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgg > 1:12593‑M1/1‑101 (MQ=255) cGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACGATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgg < 2:12593‑M1/147‑47 (MQ=255) aGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaac > 2:551941‑M2/1‑137 (MQ=255) cGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgc < 1:7498‑M2/150‑18 (MQ=255) aGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGCCTGGCCTCttcgcgggtaaaaccgctccc < 2:65329‑M2/150‑22 (MQ=255) gggCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctccca < 1:159425‑M1/150‑62 (MQ=255) gtgggtggGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgg > 1:572587/1‑150 (MQ=255) gtgggAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTAGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAgggggg > 1:197079/1‑150 (MQ=255) gAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGa < 2:7498/150‑1 (MQ=255) gACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAg < 2:279566/150‑1 (MQ=255) cGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAgggg > 1:192683/1‑150 (MQ=255) tAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaac > 1:592812‑M2/1‑101 (MQ=255) tAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaac < 2:592812‑M2/114‑14 (MQ=255) gaaaGCCTATGCACGAAAATACAAAACAGTATAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTg > 1:570100/2‑150 (MQ=255) aaaGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGa < 2:572587/150‑1 (MQ=255) aGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAAt < 1:478021/150‑1 (MQ=255) ccACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCca > 2:47838/1‑150 (MQ=255) ccACAAGACTTTTGGGAGCCGTTTTTCCCGTGAATGCGTCGGAGCAGGCAACGAGGTTGTCTAGTCTGTCCTCTTCGCGGGTATCCCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCca < 1:337228/150‑1 (MQ=255) acaATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCcag < 1:266913/149‑1 (MQ=255) acaATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCcag > 2:266913/1‑149 (MQ=255) aaTACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCcagcag < 2:192683/150‑1 (MQ=255) tgGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgccc < 1:159425‑M2/150‑90 (MQ=255) gggAGCGGTTTTACCCGCGAAgaggccaggccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgccct < 2:65329‑M1/150‑130 (MQ=255) gCGGGTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacg < 1:7498‑M1/150‑134 (MQ=255) gCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCAcc < 2:297914/95‑1 (MQ=255) gCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCAcc > 1:297914/1‑95 (MQ=255) gTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtct > 2:551941‑M1/1‑13 (MQ=255) gTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggcttta > 1:592812‑M1/1‑13 (MQ=255) gTTTACCCGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggcttta < 2:592812‑M1/114‑102 (MQ=255) gTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTggg > 1:589903/1‑150 (MQ=255) tttACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGt < 2:589903/150‑1 (MQ=255) cccGCGAAgaggccagaccagacaacctcgttgcctgctccgacgcattcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggt > 1:373287‑M1/1‑8 (MQ=255) ccGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtatcgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacg < 2:12593‑M2/147‑102 (MQ=255) ccGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtatcgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacg > 1:12593‑M2/1‑46 (MQ=255) ccGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTGCACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGaa < 1:458976/97‑1 (MQ=255) ccGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGaa > 2:458976/1‑97 (MQ=255) cgcgAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCttcgcgggtaaacccgctcccacaagtattgtgggggcttgtattttcgtgcataggctttacggtccaggccgctcccacccacgcccttacggtctacggtga > 2:159425‑M2/1‑45 (MQ=255) cgAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTAGACGCTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCg > 1:465783/1‑150 (MQ=255) | TTTACATAGTCGAAATGCCGGAAGCTGGCGGCGTAGCGGGGGGCTTCACCGTAGACCGTAAGGGCGTGGGTGGGAGCGGCCTGGACCGTAAAGCCTATGCACGAAAATACAAGCCCCCACAATACTTGTGGGAGCGGGTTTACCCGCGAATGCGTCGGAGCAGGCAACGAGGTTGTCTGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGGGGCTGATCACCGGGAGGGGTGAATCAGTCCTGGCGGCTGGTCACTTCCAGCAGGTGGTAGCCGAACTGGGTCTTCACCG > NC_002947/3464174‑3464469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |