New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3622255 =	36 (1.540)	4 (0.190)	4/230	NT	11.3%	intergenic (‑175/+51)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
	?	NC_002947	3622301 =	30 (1.420)					intergenic (‑221/+5)	PP_3192/PP_3193	hypothetical protein/hypothetical protein

CTATGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGC  >  NC_002947/3622110‑3622403                                                                                                                                                   |                                                                                                                                                     gttcttctgcgcgatgcagaaggtcgcctgctgggcgccatcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGcc                                                                                                                                                   <  1:157505‑M1/4‑1 (MQ=255)     ttctgcgcgatgcagaaggtcgcctgctgggcgccatcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGCCTTgg                                                                                                                                               >  1:552830‑M1/143‑150 (MQ=255)             tGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTcc                                                                                                                                      >  2:229588/1‑150 (MQ=255)               gagaATACGGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGc                                                                                                                                    <  2:81942/150‑1 (MQ=255)                       tGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAAttgtt                                                                                                                            >  2:516305/1‑150 (MQ=255)                       tGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAAttgtt                                                                                                                            >  2:349879/1‑150 (MQ=255)                            ctgctgggcgccatcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatctccagccctgagccaaCGCCTTg                                                                                                                                                >  1:545800‑M1/120‑126 (MQ=255)                            ctgctgggcgccatcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatctccagccctgagccaaCGCCTTg                                                                                                                                                <  2:545800‑M1/7‑1 (MQ=255)                              aaGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTC‑CGTCGAGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGaa                                                                                                                     <  1:344616/150‑1 (MQ=255)                                gACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACa                                                                                                                   >  2:256365/1‑150 (MQ=255)                                   gcgccatcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAgg                                                                                                                 >  2:26739‑M1/113‑150 (MQ=255)                                       catcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCaa                                                                                                             >  1:340675‑M1/109‑150 (MQ=255)                                       catcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCaa                                                                                                             <  2:340675‑M1/42‑1 (MQ=255)                                        atcggcgtcagtggcgatacctcggacaacgatgagcggtgcgcgctgctggccatcgaagcgctcgggctgatcggcgacagcggcgatcttcagccctgagccaaCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAg                                                                                                            >  2:157505‑M1/108‑150 (MQ=255)                                              gggTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTc                                                                                                                                                      <  1:339468/101‑1 (MQ=255)                                              gggTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTc                                                                                                                                                      >  2:339468/1‑101 (MQ=255)                                                 tCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTc                                                                                                  >  1:231674/1‑150 (MQ=255)                                                    ggATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAgg                                                                                               >  1:263086/1‑150 (MQ=255)                                                     gATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAggg                                                                                              <  2:218082/150‑1 (MQ=255)                                                     gATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAggg                                                                                              <  1:229588/150‑1 (MQ=255)                                                              cTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCAAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATc                                                                                     >  2:398098/1‑150 (MQ=255)                                                               tGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATcg                                                                                    >  2:193295/1‑150 (MQ=255)                                                                ggCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATcgc                                                                                   <  1:478879/150‑1 (MQ=255)                                                                 gCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGCCCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGTCAAGGCGTTGGCTCAGGGCTGAAGATcgcc                                                                                  <  1:349879/150‑1 (MQ=255)                                                                 gCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATcgcc                                                                                  <  2:150088/150‑1 (MQ=255)                                                                  cTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATcgccg                                                                                 <  1:143095/150‑1 (MQ=255)                                                                         ccGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGc                                                                          <  1:256365/150‑1 (MQ=255)                                                                             tCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGc                                                                                             <  2:353322/127‑1 (MQ=255)                                                                             tCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGc                                                                                             >  1:353322/1‑127 (MQ=255)                                                                                 cTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGc                                                                  >  2:18666/1‑150 (MQ=255)                                                                                  tCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTtggt                                                                                                                         >  1:462321/1‑94 (MQ=255)                                                                                  tCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTtggt                                                                                                                         <  2:462321/94‑1 (MQ=255)                                                                                                    agcagcATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGcc                                                >  2:29762/1‑150 (MQ=255)                                                                                                             ccAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGa                                                              <  2:241667/127‑1 (MQ=255)                                                                                                             ccAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGa                                                              >  1:241667/1‑127 (MQ=255)                                                                                                                    ctccAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCt                                >  1:351992/1‑150 (MQ=255)                                                                                                                            gCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTg                        >  2:52085/1‑150 (MQ=255)                                                                                                                              agccGCAGCATGGGGCGACCTCGCCTTGGCCTGGATCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCGCAGGGCTGAAGATCGACGCTGGCACCGATGAGCCCGAGCGCGTCGATGGCCGGCAGCGCGCACCGCTCATCGTTGTc                      >  1:328890/3‑150 (MQ=255)                                                                                                                                 cGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGa                   <  1:193295/150‑1 (MQ=255)                                                                                                                                 cGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGa                   <  1:516305/150‑1 (MQ=255)                                                                                                                                 cGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGa                   >  1:322806/1‑150 (MQ=255)                                                                                                                                  gcagcaTGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAg                  >  1:486872/1‑150 (MQ=255)                                                                                                                                  gcagcaTGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAg                  <  2:322806/150‑1 (MQ=255)                                                                                                                                       aTGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGAAGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATc             <  1:466202/150‑1 (MQ=255)                                                                                                                                            gCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCAc        >  1:527842/1‑150 (MQ=255)                                                                                                                                            gCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCAc        >  2:358756/1‑150 (MQ=255)                                                                                                                                                  tCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGc  >  1:517911/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CTATGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCG‑GCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGGCTCCGCCAATTGTTGGTGGAACAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGC  >  NC_002947/3622110‑3622403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.