| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3655118 | 23 (0.990) | 4 (0.180) | 4/246 | NT | 14.7% | coding (1318/1620 nt) | PP_3220 | ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 3655151 | 24 (1.060) | coding (1285/1620 nt) | PP_3220 | ABC transporter ATP‑binding protein | |||||
GCCACCACCGCCAGGTCATGGGAGACCAGCACATAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCAGGCCGAAA > NC_002947/3654973‑3655266 | gCCACCACCGCCAGGTCATGGGAGACCAGCACATAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGcc > 1:608154/1‑150 (MQ=255) accaccGCCAGGTCATGGGAGACCAGCACATAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAAc > 2:541945/1‑150 (MQ=255) gCCAGGTCATGGGAGACCAGCACATACGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGt < 1:211246/150‑1 (MQ=255) ccAGGTCATGGGAGACCAGCACATAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTg > 1:134911/1‑150 (MQ=255) ggAGACCAGCACATAGACCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCAc < 2:362129/150‑1 (MQ=255) cAGCACATAGGCCATGCCGACGTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGcgccaacgcgtggcgattgcacgggcgttg < 1:187875‑M1/150‑31 (MQ=255) acaTAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGc > 2:521580‑M2/1‑149 (MQ=255) aGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑c < 2:392748/150‑1 (MQ=255) gCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGcgccaacgcgtggcgattgcacgggcgttggcactggagc < 1:183427‑M1/150‑41 (MQ=255) gTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGcgccaacgcgtggcgattgcacgggcgttggcac < 1:183205‑M1/118‑35 (MQ=255) gTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGcgccaacgcgtggcgattgcacgggcgttggcac > 2:183205‑M1/1‑84 (MQ=255) agcagGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAgg < 1:541945/150‑1 (MQ=255) gAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCACACCGCATTTCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCATGGGCAGGCGATCGAGGAACTGCAc > 1:344675/1‑150 (MQ=255) gcgcCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAAtt < 1:426316/150‑1 (MQ=255) cTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCAc > 2:214003/1‑150 (MQ=255) acGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑c < 1:213115/88‑1 (MQ=255) acGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑c > 2:213115/1‑88 (MQ=255) tCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGc > 1:254208/1‑150 (MQ=255) cACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACt > 1:450613/1‑114 (MQ=255) cACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACt < 2:450613/114‑1 (MQ=255) actgactgGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGGGCAATCGCCACGCGTTGTCTGTGGCCCAACAG‑GAATTTTTGGGGCAGGCGATCGGGGAACTGCACTGGCAATTGCACCCGTGTGCTCAGGTCGCGGGc > 1:199488/1‑150 (MQ=255) tgGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGaa > 1:537246/1‑105 (MQ=255) tgGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGaa < 2:537246/105‑1 (MQ=255) tCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAg > 2:157076/1‑98 (MQ=255) tCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAg < 1:157076/98‑1 (MQ=255) caCCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCg > 1:19342/1‑150 (MQ=255) ctGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCa > 1:326363/1‑150 (MQ=255) ggCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACt > 1:276024/1‑87 (MQ=255) ggCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACt < 2:276024/87‑1 (MQ=255) gCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGctggagccagaggtgctgctgctcgatgagccagtcagtgcactggacgtgtctgtgcaggcgcagatcctcgccctgctggacgaattgcagcgcgagctcggcatggc < 1:183427‑M2/150‑111 (MQ=255) aGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCa > 1:238090/1‑142 (MQ=255) aGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCa < 2:238090/142‑1 (MQ=255) aGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCAGGCCGaaa < 1:155884/150‑1 (MQ=255) aGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCAGGCCGaaa < 2:254208/150‑1 (MQ=255) gcgccaacgcgtggcgattgcacgggcgttggcactggagccagaggtgctgctgctcgatgagccagtcagtgcactggacgtgtctgtgcaggcgcagatcctcgccctgctggacgaattgcagcgcgagctcggcatggcctatgt > 2:521580‑M1/1‑1 (MQ=255) gTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGctggagccagaggtgctgctgctcgatgagccagtcagtgcactggacgtgtctgtgcaggcgcagatcctcgccctgctggac < 1:183205‑M2/118‑85 (MQ=255) gTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGctggagccagaggtgctgctgctcgatgagccagtcagtgcactggacgtgtctgtgcaggcgcagatcctcgccctgctggac > 2:183205‑M2/1‑34 (MQ=255) | GCCACCACCGCCAGGTCATGGGAGACCAGCACATAGGCCATGCCGAGCTCGCGCTGCAATTCGTCCAGCAGGGCGAGGATCTGCGCCTGCACAGACACGTCCAGTGCACTGACTGGCTCATCGAGCAGCAGCACCTCTGGCTCCAGTGCCAACGCCCGTGCAATCGCCACGCGTTGGCGCTGG‑CCACCTGACAATTCCCTGGGCAGGCGATCGAGGAACTGCACTGGCAATTGCACCCGTGTGATCAGCTCGCGGGCCTTGCGCTCTAGTGCCTCGCCCCGGAGCAGGCCGAAA > NC_002947/3654973‑3655266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |