New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	25 (1.070)	4 (0.180)	4/248	NT	15.3%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	20 (0.880)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

GTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACAC  >  NC_002947/6062032‑6062326                                                                                                                                                    |                                                                                                                                                    gTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCa                                                                                                                                                   >  1:30000/1‑150 (MQ=255)             aGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGGCCAGTGCGCCTCCAGGCCCTAAGTCACCTGCTGCTGACGGGGCAGCGCCCACGCCTGAACTAAGCGTACCCCCCGGCCCTCCGGCCCACCCTTCACAgcc                                                                                                                                       >  1:249186/1‑150 (MQ=255)                   agggCCGAAACCACCAGGGCGCAGGCGATCACGCTGCCGTCCGACAAGTGGGCCTCCAGGCCTTGAGTCACCTGCGGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCa                                                                                                                                 <  2:249186/148‑1 (MQ=255)                   aTGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCa                                                                                                                                 <  1:424239/150‑1 (MQ=255)                     ggCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                               <  2:361835/150‑1 (MQ=255)                           aaCCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGACCgg                                                                                                                         <  2:506539/150‑1 (MQ=255)                              caccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCAccc                                                                                                                                                >  1:342624/1‑124 (MQ=255)                              caccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCAccc                                                                                                                                                <  2:342624/124‑1 (MQ=255)                                ccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgca                                                                                                                    >  2:209335/1‑150 (MQ=255)                                ccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgca                                                                                                                    >  1:69249/1‑150 (MQ=255)                                     tCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTTAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCcaccctgctgcacccggccgctgcggcggctgtgcagg                                                                                                               <  1:314699‑M1/150‑39 (MQ=255)                                           gCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggc                                                                                                         <  2:592600‑M1/150‑45 (MQ=255)                                           gCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggc                                                                                                         <  2:606519‑M2/150‑4 (MQ=255)                                                     tGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGtt                                                                                               <  2:69249/150‑1 (MQ=255)                                                     tGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGtt                                                                                               <  2:30000/150‑1 (MQ=255)                                                       ccGTCCGACAAGTGCGCCTCCAGGCCTTGATTTACCTGCTGAAGACGGGTCAGTACCGGCCCCAGGTAGAAGCGTACACCCTGGCCCTCCACCCCACCCTGCACAGCCGCCGCACCGGCCGGGTGCAGCAGGGTCGGCATGATCTGGTca                                                                                             <  2:32748/150‑1 (MQ=255)                                                                    gcgcCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctggagggcctgggtgtac                                                                                       <  2:379056‑M1/143‑63 (MQ=255)                                                                    gcgcCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctggagggcctgggtgtac                                                                                       >  1:379056‑M1/1‑81 (MQ=255)                                                                         tCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCacac                                                                                          <  1:52354/135‑1 (MQ=255)                                                                         tCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCacac                                                                                          >  2:52354/1‑135 (MQ=255)                                                                                 ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                        <  2:354697/113‑1 (MQ=255)                                                                                 ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                        >  1:354697/1‑113 (MQ=255)                                                                                      tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAgccgc                                                              >  1:506435/1‑150 (MQ=255)                                                                                        aCCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGccc                                                            >  2:593790/1‑150 (MQ=255)                                                                                           tgctgcAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAGCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAgg                                                         <  2:444954/150‑1 (MQ=255)                                                                                           tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAgg                                                         <  1:327824/150‑1 (MQ=255)                                                                                              tgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                      >  1:53851/1‑150 (MQ=255)                                                                                               gAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCa                                                     <  1:598466/150‑1 (MQ=255)                                                                                                 aGACGGGTCAGCACCGGCCCCGGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATg                                                   <  1:606519/150‑1 (MQ=255)                                                                                                   aCGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTc                                                 <  2:506435/150‑1 (MQ=255)                                                                                                       gTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                             >  2:514582/1‑150 (MQ=255)                                                                                                                             aGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCgg                                                                                                          <  2:589885‑M2/67‑3 (MQ=255)                                                                                                                             aGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCgg                                                                                                          >  1:589885‑M2/1‑65 (MQ=255)                                                                                                                                gTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgc                           <  2:379056‑M2/143‑82 (MQ=255)                                                                                                                                gTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgc                           >  1:379056‑M2/1‑62 (MQ=255)                                                                                                                                      ccAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa              >  2:415573/1‑150 (MQ=255)                                                                                                                                      ccAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa              >  1:118801/1‑150 (MQ=255)                                                                                                                                                  gCCgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgc  <  2:606519‑M1/150‑148 (MQ=255)                                                                                                                                                  gCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgc  <  2:592600‑M2/150‑107 (MQ=255)                                                                                                                                                   ccgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctggagggcctgggtgtacgct                                                                                    <  2:589885‑M1/67‑66 (MQ=255)                                                                                                                                                   ccgaccctgctgcacccggccgctgcggcggctgtgcagggtgggctggagggcctgggtgtacgct                                                                                    >  1:589885‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACAC  >  NC_002947/6062032‑6062326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.