New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 302209	27 (1.160)	6 (0.270)	6/244	NT	17.2%	coding (373/1314 nt)	envZ	osmolarity sensor protein EnvZ
	?	NC_002947	= 302222	32 (1.430)					coding (386/1314 nt)	envZ	osmolarity sensor protein EnvZ

GGGTGTGCCCGAAGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCTCAAACGCTTG  >  NC_002947/302076‑302367                                                                                                                                                   |                                                                                                                                                    gggTGTGCCCGAAGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGttg                                                                                                                                                  <  1:42095‑M2/150‑4 (MQ=255)   gtgtGCCCGAAGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGttggc                                                                                                                                                <  2:215685‑M2/150‑6 (MQ=255)          cGAAGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGt                                                                                                                                         >  2:438560/1‑150 (MQ=255)            aaGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGttgg                                                                                                                                                 >  2:74552‑M2/1‑136 (MQ=255)            aaGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGttgg                                                                                                                                                 <  1:74552‑M2/140‑5 (MQ=255)                    cagcaTTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTAc                                                                                                                               <  1:219978/150‑1 (MQ=255)                      gcaTTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTAccc                                                                                                                             <  1:438560/150‑1 (MQ=255)                                   aGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGt                                                                                                                >  2:569937/1‑150 (MQ=255)                                         aTCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCag                                                                                                          <  1:431049/150‑1 (MQ=255)                                               cAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATc                                                                                                    <  1:270210/150‑1 (MQ=255)                                                    gCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGATCGGCGGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGaa                                                                                               >  1:314079/1‑150 (MQ=255)                                                      aGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑Cg                                                                                            >  1:485099/1‑150 (MQ=255)                                                          gCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑Tgct                                                                                       <  2:42095/150‑1 (MQ=255)                                                                   gCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGtt                                                                              >  2:161444/1‑150 (MQ=255)                                                                    cTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTc                                                                             <  1:215685/150‑1 (MQ=255)                                                                     tGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTcc                                                                            >  2:546020/1‑150 (MQ=255)                                                                     tGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTcc                                                                            <  1:520905/150‑1 (MQ=255)                                                                       ggTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTg                                                                          >  2:40766/1‑150 (MQ=255)                                                                       ggTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTg                                                                          <  2:537788/150‑1 (MQ=255)                                                                           acgacACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCa                                                                      >  2:514687/1‑150 (MQ=255)                                                                                     aGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCttgtt                                                            <  2:292974/150‑1 (MQ=255)                                                                                        tcggcggCGCATCCCTGCACAGCACGAGTTGTGGGTCTCAGCGCCGTGGGTGGTGCCTGGCTGGCTGAAAGTGCCGCGGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTc                                                         <  2:314079/149‑1 (MQ=255)                                                                                        gCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTc                                                         <  1:209755/150‑1 (MQ=255)                                                                                                gcATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCt                                                 <  1:546020/150‑1 (MQ=255)                                                                                                          aCCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGAt                                                                                                     >  1:194947/1‑90 (MQ=255)                                                                                                          aCCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGAt                                                                                                     <  2:194947/90‑1 (MQ=255)                                                                                                              cccgcGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGAttttt                                   >  1:574900/1‑150 (MQ=255)                                                                                                                cgcgTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGt                                 >  2:538544/1‑150 (MQ=255)                                                                                                                   gTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGATTCGCTTAAAGTGCTTCGGTACCACCGACCATTGCGGGGGCACATGAGCCCAAATCGCCGCTGG‑‑TGGTTGCTGGCCATTGGCTTGTTGTCCACCGCCTCGGGGGGAATGGTTGTACg                              >  1:444672/1‑150 (MQ=255)                                                                                                                           tCAATGCGCCAAGCCTGGGGCCGGGttggcgcattgacccacaacgcgggcggtgcatggatgcgcagccgcacttcggtgtcgtcacccagctcggcctgcatctgccgttggta                                                          >  2:143283‑M2/1‑25 (MQ=255)                                                                                                                           tCAATGCGCCAAGCCTGGGGCCGGGttggcgcattgacccacaacgcgggcggtgcatggatgcgcagccgcacttcggtgtcgtcacccagctcggcctgcatctgccgttggta                                                          <  1:143283‑M2/116‑92 (MQ=255)                                                                                                                              aTGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAAcc                   >  1:297456/1‑150 (MQ=255)                                                                                                                               tGCGCCAAGCCTGGGGCCGGGttggcgcattgacccacaacgcgggcggtgcatggatgcgcagccgcacttcggt                                                                                              >  2:584617‑M2/1‑21 (MQ=255)                                                                                                                               tGCGCCAAGCCTGGGGCCGGGttggcgcattgacccacaacgcgggcggtgcatggatgcgcagccgcacttcggt                                                                                              <  1:584617‑M2/76‑56 (MQ=255)                                                                                                                                 cgcCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGc                >  2:512226/1‑150 (MQ=255)                                                                                                                                  gcCAAGCCTGGGGCCGGGTTGGCCGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGcc               >  1:426297/1‑150 (MQ=255)                                                                                                                                   ccAAGCCTGGGGCCGGGttggcgcattgaaccacaacgcgggcggtgcatggatgcgcagccgcacttcggtgtcgtcacccagctcggcctgcat                                                                      <  1:697‑M2/96‑80 (MQ=255)                                                                                                                                   ccAAGCCTGGGGCCGGGttggcgcattgaaccacaacgcgggcggtgcatggatgcgcagccgcacttcggtgtcgtcacccagctcggcctgcat                                                                      >  2:697‑M2/1‑17 (MQ=255)                                                                                                                                     aaaccTGGGGCCGGGTTTGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCt            >  2:497424/4‑150 (MQ=255)                                                                                                                                     aaGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTACGTCGAAAAATAGCCATTGGCTGGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCt            >  1:412506/1‑150 (MQ=255)                                                                                                                                         cTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCTCaaa        <  1:161444/150‑1 (MQ=255)                                                                                                                                          tGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTACACCGCCCCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCTCAAAc       <  1:569937/150‑1 (MQ=255)                                                                                                                                               ccGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCTCAAACGCTTg  <  1:538544/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGGTGTGCCCGAAGGCGAGCAGCATTGGCCCTACAGTGAGATCTACCAACGGCAGATGCAGGCCGAGCTGGGTGACGACACCGAAGTGCGGCTGCGCATCCATGCACCGCCCGCGTTGTGGGTCAATGCGCCAAGCCTGGGGCCGGGTTGGCTGAAAGTGCCGCTGTACCCGCACCCATTGCGTGGGCAGAAGATCTGGAA‑CG‑TGCTGGGCTGGTTCCTGGCCATTGGCTTGTTGTCCACCGCCTCGGCGTGGATTTTTGTACGTCAGCTCAACCAGCCGCTCAAACGCTTG  >  NC_002947/302076‑302367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.