New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 65278515 (0.640)6 (0.310) 6/214 NT 48.7% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808204 0 (0.000)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

CAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCT  >  NC_002947/4808057‑4808283
                                                                                                                                                   |                                                                               
cAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGANTTTCAGCGCNTGGGAGGTNTTCGCCGGGAGAGTTTCAGCGCCTGGga                                                                               >  1:195824‑M2/1‑148 (MQ=255)
   tgtgTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgcgat                                                                            >  2:8568‑M2/1‑145 (MQ=255)
                                                                       tttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcct        >  1:526745‑M2/1‑77 (MQ=255)
                                                                             cgcCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcggga  <  1:553964‑M2/150‑80 (MQ=255)
                                                                                                         tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcg     >  1:575216‑M2/1‑43 (MQ=255)
                                                                                                         tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcg     <  2:575216‑M2/119‑77 (MQ=255)
                                                                                                                   ggAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgc                                                       >  1:218919‑M2/1‑33 (MQ=255)
                                                                                                                   ggAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgc                                                       <  2:218919‑M2/59‑27 (MQ=255)
                                                                                                                                                   |                                                                               
CAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCT  >  NC_002947/4808057‑4808283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.