New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 734332	23 (0.990)	4 (0.190)	4/232	NT	15.7%	coding (988/1296 nt)	ndh	NADH dehydrogenase
	?	NC_002947	= 734372	22 (1.030)					coding (948/1296 nt)	ndh	NADH dehydrogenase

AGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCT  >  NC_002947/734232‑734510                                                                                                                                             |                                                                                                                                           aGCGAGCCATAGTCCTTGTACTCGAACGTCGGCAGGGTCTTGTTCTCGAGGCGCGCCTTTAGGCTGTGCGCCAAAATAGACCGGAACCGGCCCTGCGTCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGgcggcg                                                                                                                                   >  1:444321/1‑150 (MQ=255)  gCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCggg                                                                                                                                            >  2:51510/1‑140 (MQ=255)  gCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCggg                                                                                                                                            <  1:51510/140‑1 (MQ=255)  gCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgc                                                                                                                                  >  1:109960‑M2/1‑140 (MQ=255)   cGAGCCATAGGCCCGGTACTCGGACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCGGGTGCGCCGCCGGTGCGCGCGGCGGCACGTGACGATCGCTGCCGGGTTGCGGGcaggcggcgca                                                                                                                                 >  1:186195‑M2/1‑139 (MQ=255)            gTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGaa                                                                                                                        <  1:451769/150‑1 (MQ=255)                                gCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTcgc                                                                                                    >  1:89046/1‑150 (MQ=255)                                 cAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTcgcg                                                                                                   >  1:298499/1‑150 (MQ=255)                                  aGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCgg                                                                                                  <  2:366270/150‑1 (MQ=255)                                       cTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCAcc                                                                                                                           <  1:410977/120‑1 (MQ=255)                                       cTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCAcc                                                                                                                           >  2:410977/1‑120 (MQ=255)                                         tGTTCTCCGGGCGCGCCGGCAGGCTTTGCGCCAGCATCGAAGGCGGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGttt                                                                                           <  2:76058/150‑1 (MQ=255)                                             ctcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAg                                                                                       <  1:596938/150‑1 (MQ=255)                                              tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAgg                                                                                      >  1:241467/1‑150 (MQ=255)                                                   gcgcgcCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAgg                                                                                 <  2:297880/150‑1 (MQ=255)                                                    cgcgcCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAggg                                                                                <  2:89046/150‑1 (MQ=255)                                                                cTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGCAGGGCGCCCGGCTAGc                                                                    >  2:493854/1‑150 (MQ=255)                                                                    gcgcCAGCATCGAAGGCTGCTGGTGCGCCGGCTGTGTGCGCGGCGGCACGTTATCATCGCTGCCGGGTTGCGGGTAGGAGGTGGAGTCACCGAAGTCGAAGATGAGCTAGTTGCAGGTGGTAGCAAGGGTAGCCCGCTCGACCAGCCGGt                                                                <  2:207294/150‑1 (MQ=255)                                                                                   ccTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggact                                                 <  2:199814‑M2/150‑92 (MQ=255)                                                                                               ccgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGCGGGCACGAGCACCTTGGTGATGTTGGTGTTTTCCAGGCCATCGa                                     >  2:5733/1‑150 (MQ=255)                                                                                                cgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctggt                                    <  2:309695‑M2/150‑105 (MQ=255)                                                                                                cgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctggt                                    >  1:309695‑M2/1‑46 (MQ=255)                                                                                                                   aCGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGTTTTCCAGGCCATCGATGTACTTGAGGAAACCTGgc                 >  1:93421/1‑150 (MQ=255)                                                                                                                        aCGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGgc                                                                               <  2:101050/83‑1 (MQ=255)                                                                                                                        aCGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGgc                                                                               >  1:101050/1‑83 (MQ=255)                                                                                                                          gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGaaa                       >  1:8488/1‑137 (MQ=255)                                                                                                                          gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGaaa                       <  2:8488/137‑1 (MQ=255)                                                                                                                               cTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagttcaaggactatggctcgctggtgtcgctgtcgcgcttctcggcggtgggcaac     >  1:199814‑M2/1‑15 (MQ=255)                                                                                                                                  ccGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCt  <  1:352652/150‑1 (MQ=255)                                                                                                                                      gTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGttt                                                 <  2:368632/99‑1 (MQ=255)                                                                                                                                      gTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGttt                                                 >  1:368632/1‑99 (MQ=255)                                                                                                                                         gCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                                                          >  2:361942/1‑87 (MQ=255)                                                                                                                                         gCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                                                          <  1:361942/87‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           AGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCT  >  NC_002947/734232‑734510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.